Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1988 bp · TkA06G039920|TK1151|cDNA
GGAAGCTCAAGCTAGTAGCACAATCCAAAGTGGGAAACCAATCCAAACCCAGATCAAGAAATCTCCATCTCTCACATGGGGTTTTTCGGTAATCCCTTAAATTTCACGAACATTACTAATTGCCGGTGTTCATGTTGATGTTCTTGTTCTGGTTTTCGTGTAATTCAGTCTATACAATCTGAGATGGTTGTTGTATTTGAGACATGGGCACTTATCATTGTTCTTGTGGTTTCTCTTCAAAGTCAAATTCTTGTGATTTC...
1116 bp · TkA06G039920|TK1151|CDS
ATGGTTGTTGTATTTGAGACATGGGCACTTATCATTGTTCTTGTGGTTTCTCTTCAAAGTCAAATTCTTGTGATTTCACAAAACTTGTCGTGCAATTCTGATGACCTAAGAGGATTACGAGGTTTCGTGAATGGATTAGAATCGCCGATTGTCGGGTGGTGGCCAACAGATTCATCATCTTCTTCCGATTGCTGTAACTGGATCGGTATCACTTGTAATTCCACTTCTGATAGGATTGTAAGATTAGAACTCCCAAAGAA...
Protein
Download Protein FASTA371 aa · TkA06G039920|TK1151|PROTEIN
MVVVFETWALIIVLVVSLQSQILVISQNLSCNSDDLRGLRGFVNGLESPIVGWWPTDSSSSSDCCNWIGITCNSTSDRIVRLELPKKRLIGNFSDSISKLNQLRTLNLSQNFLRGPLPISLFHLPHLEELDLSSNKFNGVLPVNINLPALLDISYNAFRSSLPSALCVNSNEIRVLKFAVNYFNGTIPPQFGKCSFLERLDLASNFLSGIVRDVLFKLPNLVELALQDNRFTAIEGIGAIPGSLSGMKSIEILDLSFNSL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G039920 |
|---|---|
| TK1151 ID | TkA06G039920 |
| OH-1004 ID | LXL04_025851 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 46.100 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 94.070Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G039920 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:10774056-10777018 (+) | |||||||||
| Description | Similar to PSKR: Phytosulfokine receptor 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006952 defense response Biological Process GO:0007165 signal transduction Biological Process GO:0009617 response to bacterium Biological Process GO:0009826 unidimensional cell growth Biological Process GO:0010073 meristem maintenance Biological Process GO:0031347 regulation of defense response Biological Process GO:0045087 innate immune response Biological Process GO:0045851 pH reduction Biological Process GO:0051707 response to other organism Biological Process GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0016020 membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G17240 ath:AT1G72300 ath:AT2G02220 ath:AT5G53890 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00560LRR_128-32 aaPF12799LRR_429-32 aaPF08263LRRNT_233-73 aaPF25013LRR_Zer-163-113 aaPF13855LRR_882-137 aaPF24048LRR_NXF1-582-137 aaPF23598LRR_1495-275 aaPF12799LRR_496-112 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G039920 | PF00560 | LRR_1 | 28 | 32 | 2.2e-17 | 60.2 |
| TkA06G039920 | PF12799 | LRR_4 | 29 | 32 | 2.8e-11 | 44.0 |
| TkA06G039920 | PF08263 | LRRNT_2 | 33 | 73 | 5.7e-06 | 27.2 |
| TkA06G039920 | PF25013 | LRR_Zer-1 | 63 | 113 | 0.05 | 14.5 |
| TkA06G039920 | PF13855 | LRR_8 | 82 | 137 | 2.7e-18 | 66.2 |
| TkA06G039920 | PF24048 | LRR_NXF1-5 | 82 | 137 | 0.0025 | 18.1 |
| TkA06G039920 | PF23598 | LRR_14 | 95 | 275 | 3.9e-05 | 23.3 |
| TkA06G039920 | PF12799 | LRR_4 | 96 | 112 | 2.8e-11 | 44.0 |
| TkA06G039920 | PF24758 | LRR_At5g56370 | 96 | 135 | 0.019 | 15.4 |
| TkA06G039920 | PF23211 | LRR_LRWD1 | 99 | 148 | 6.1e-05 | 23.5 |
| TkA06G039920 | PF00560 | LRR_1 | 102 | 124 | 2.2e-17 | 60.2 |
| TkA06G039920 | PF12799 | LRR_4 | 102 | 136 | 2.8e-11 | 44.0 |
| TkA06G039920 | PF13516 | LRR_6 | 103 | 111 | 1e-06 | 29.1 |
| TkA06G039920 | PF13516 | LRR_6 | 123 | 138 | 1e-06 | 29.1 |
| TkA06G039920 | PF00560 | LRR_1 | 126 | 145 | 2.2e-17 | 60.2 |
| TkA06G039920 | PF13855 | LRR_8 | 151 | 163 | 2.7e-18 | 66.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.