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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G036350
Reference: TK1151 Chr: Chr06 Coordinates: 9751331-9752888 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1239 bp · TkA06G036350|TK1151|cDNA

AACAAAGACTTTCCAACTTCAAAACCTCTATAAGAACGTGGCACACTTGTTAGCTTCACCTTCAATCGGTTGAATAATTCTTCATACATCAACAATGGTGGCTACAACTACATCATTTTCCTTAGACCTCAATCTTTTCCCCTTCCACAAAATCGATGACATCCCCATTACGGAAGTCGTTCATTCTGATGACGATGAACATGGAGAAGAAGAAGACGACGTTGATCATGGGGATTTAAGCAGAATAAGCAACGAAAACA...

CDS

Download CDS FASTA

780 bp · TkA06G036350|TK1151|CDS

ATGGTGGCTACAACTACATCATTTTCCTTAGACCTCAATCTTTTCCCCTTCCACAAAATCGATGACATCCCCATTACGGAAGTCGTTCATTCTGATGACGATGAACATGGAGAAGAAGAAGACGACGTTGATCATGGGGATTTAAGCAGAATAAGCAACGAAAACAAGAAGCTAAAGGAGATGCTTAAGACCATATGCGAAAACTACAACTCCCTTCAGACGCATGTTAAGAGCTTAATGCAAGATAAGTTAATCTTTGA...

Protein

Download Protein FASTA

259 aa · TkA06G036350|TK1151|PROTEIN

MVATTTSFSLDLNLFPFHKIDDIPITEVVHSDDDEHGEEEDDVDHGDLSRISNENKKLKEMLKTICENYNSLQTHVKSLMQDKLIFESNPKKRKLDETVQQSSWKMPHLESPKTGVRRVYVPTDPSDKSLIVKDGYQWRKYGQKVTRDNPSPRAYYKCSSSPTCPVKKKVQRSVDDAGVLVATYEGEHNHKSTKEEAAYALANERKNSRSERRSNSPIGVTKFDELLVEKMATFLGKDPDFTAELAAAISSKILEVDLF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G036350
TK1151 IDTkA06G036350
OH-1004 IDLXL04_025925
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 99.614 / OH-1004 99.614
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G036350
LocationChr06:9751331-9752888 (-)
DescriptionSimilar to WRKY40: Probable WRKY transcription factor 40
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g80840 Transcription factor (By similarity). No verified direct reference in this release
At4g31800 Transcription factor.
Potentiation of developmentally regulated plant defense response by AtWRKY18, a pathogen-induced Arabidopsis transcription factor.2002 · DOI: 10.1104/pp.001057
At2g25000 Transcription factor. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q6IEK5 Transcription repressor. No verified direct reference in this release
Os09g0417600 Transcription repressor.
OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity.2010 · DOI: 10.1007/s12284-010-9039-6
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025925 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002237 response to molecule of bacterial origin Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006952 defense response Biological Process
GO:0009611 response to wounding Biological Process
GO:0009620 response to fungus Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0010200 response to chitin Biological Process
GO:0031347 regulation of defense response Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0050832 defense response to fungus Biological Process
GO:1905034 regulation of antifungal innate immune response Biological Process
KEGG gene cross-reference
ath:AT1G80840
ath:AT2G25000
ath:AT4G31800
dosa:Os06g0649000
osa:4341678
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.962
Rank 1 · TkA06G036350 · TK1151
Cytoplasm0.105
Rank 2 · TkA06G036350 · TK1151
Cell membrane0.024
Rank 3 · TkA06G036350 · TK1151
Endoplasmic reticulum0.012
Rank 4 · TkA06G036350 · TK1151
Mitochondrion0.011
Rank 5 · TkA06G036350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24525TTC344-76 aa
PF13851GAS44-107 aa
PF07902Gp5845-81 aa
PF18504Csm1_N49-83 aa
PF29308YEL043W_helical51-109 aa
PF09177STX6_10_61_N53-98 aa
PF15157IQCJ-SCHIP167-114 aa
PF04500FLYWCH128-190 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G036350PF24525TTC344760.002118.3
TkA06G036350PF13851GAS441070.01515.4
TkA06G036350PF07902Gp5845810.2110.6
TkA06G036350PF18504Csm1_N49830.212.7
TkA06G036350PF29308YEL043W_helical511090.09213.6
TkA06G036350PF09177STX6_10_61_N53980.03715.3
TkA06G036350PF15157IQCJ-SCHIP1671140.4711.5
TkA06G036350PF04500FLYWCH1281900.1313.2
TkA06G036350PF03106WRKY1331911.5e-2486.7
TkA06G036350PF15157IQCJ-SCHIP11371740.4711.5
TkA06G036350PF09177STX6_10_61_N1652040.03715.3
TkA06G036350PF18504Csm1_N1671830.212.7
TkA06G036350PF13851GAS1912090.01515.4
TkA06G036350PF07902Gp581982310.2110.6
TkA06G036350PF15157IQCJ-SCHIP12072200.4711.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SAH7Arabidopsis thalianasp|Q9SAH7|WRK40_ARATH Probable WRKY transcription factor 4042.300%Swiss-ProtMedium
Q9C5T4Arabidopsis thalianasp|Q9C5T4|WRK18_ARATH WRKY transcription factor 1841.700%Swiss-ProtMedium
Q9SK33Arabidopsis thalianasp|Q9SK33|WRK60_ARATH Probable WRKY transcription factor 6043.800%Swiss-ProtMedium
Q6IEK5Oryza sativa subsp. indicasp|Q6IEK5|WRK76_ORYSI WRKY transcription factor WRKY7646.100%Swiss-ProtMedium
Q6EPZ2Oryza sativa subsp. japonicasp|Q6EPZ2|WRK76_ORYSJ WRKY transcription factor WRKY7646.100%Swiss-ProtMedium

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