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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G035140
Reference: TK1151 Chr: Chr06 Coordinates: 9458441-9458974 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

534 bp · TkA06G035140|TK1151|cDNA

ACATTCGTGCTGTCTTCTTCCTCGGAGTCGCGACAGGTAAGTGCTGTCTTCTTCCTCGGAGTCGCGACCGTCGATTCTCCTTCGACAGATTCCAAGGTTCAATCGGCTGTTCCATTCGAGCGTGGAAGTGACGACGACGACGAGCAGGGCAGCAGGAAAGTGACGACGACGACGATTTTCCATCGACAAATTCCAAGGTTCAATCGAAGTCGCGAAGTGACGACGACGACAGGTAGGTTTCTTTCCAATTTCTTTCCAAT...

CDS

Download CDS FASTA

534 bp · TkA06G035140|TK1151|CDS

ACATTCGTGCTGTCTTCTTCCTCGGAGTCGCGACAGGTAAGTGCTGTCTTCTTCCTCGGAGTCGCGACCGTCGATTCTCCTTCGACAGATTCCAAGGTTCAATCGGCTGTTCCATTCGAGCGTGGAAGTGACGACGACGACGAGCAGGGCAGCAGGAAAGTGACGACGACGACGATTTTCCATCGACAAATTCCAAGGTTCAATCGAAGTCGCGAAGTGACGACGACGACAGGTAGGTTTCTTTCCAATTTCTTTCCAAT...

Protein

Download Protein FASTA

177 aa · TkA06G035140|TK1151|PROTEIN

TFVLSSSSESRQVSAVFFLGVATVDSPSTDSKVQSAVPFERGSDDDDEQGSRKVTTTTIFHRQIPRFNRSREVTTTTGRFLSNFFPIFGKFHSNFSRPTPVSFQFVLSFCSGRLISLIPSSLLPSSRYLISSSSIASKYQFDFISVQLDYSLDYSLDFPVFYFPVFDFIFLDYVTSA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G035140
TK1151 IDTkA06G035140
OH-1004 IDLXL04_021193
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)95.500
Protein coverage (%)TK1151 24.859 / OH-1004 10.304
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G035140
LocationChr06:9458441-9458974 (+)
DescriptionSimilar to At1g78280: F-box protein At1g78280
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021193 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006909 phagocytosis Biological Process
GO:0008380 RNA splicing Biological Process
GO:0017185 peptidyl-lysine hydroxylation Biological Process
GO:0018395 peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine Biological Process
GO:0030154 cell differentiation Biological Process
GO:0032463 negative regulation of protein homooligomerization Biological Process
GO:0035513 oxidative RNA demethylation Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
KEGG gene cross-reference
ath:AT1G78280
bta:508343
dre:266962
hsa:23210
pon:100173544
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.502
Rank 1 · TkA06G035140 · TK1151
Nucleus0.442
Rank 2 · TkA06G035140 · TK1151
Cell membrane0.096
Rank 3 · TkA06G035140 · TK1151
Endoplasmic reticulum0.093
Rank 4 · TkA06G035140 · TK1151
Mitochondrion0.050
Rank 5 · TkA06G035140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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