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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G032170
Reference: TK1151 Chr: Chr06 Coordinates: 8737206-8739023 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1785 bp · TkA06G032170|TK1151|cDNA

ATGCCTTATCCTCTCCAACAGCAATGGCTATTTCCACCTCTTCTTCAGGCCTCCGGATTAGCCTGCATCAACAAACCCCCCAAAAATCTCACCTTCAATCCTTCAAAAACCTCACCGATTCTTCTCTTTCTCTTTGGTCTCTCTCCATCTTCCTCGCGAATTTTGATCTTCAATTCCTCCAGCAGAAATTCCCCACCACTAAGCTTAGAAGACCTGCAACTCCAAAATTCTTCTGTACCCGAATCCGACGACGATCTTAA...

CDS

Download CDS FASTA

1785 bp · TkA06G032170|TK1151|CDS

ATGCCTTATCCTCTCCAACAGCAATGGCTATTTCCACCTCTTCTTCAGGCCTCCGGATTAGCCTGCATCAACAAACCCCCCAAAAATCTCACCTTCAATCCTTCAAAAACCTCACCGATTCTTCTCTTTCTCTTTGGTCTCTCTCCATCTTCCTCGCGAATTTTGATCTTCAATTCCTCCAGCAGAAATTCCCCACCACTAAGCTTAGAAGACCTGCAACTCCAAAATTCTTCTGTACCCGAATCCGACGACGATCTTAA...

Protein

Download Protein FASTA

594 aa · TkA06G032170|TK1151|PROTEIN

MPYPLQQQWLFPPLLQASGLACINKPPKNLTFNPSKTSPILLFLFGLSPSSSRILIFNSSSRNSPPLSLEDLQLQNSSVPESDDDLNVLIRDLFKESKTEEIGFKYYLKAKRNPDFVPQRSTLHHLIRYSMRLNNWNLVWSISEDFRKFNVYPDASNSSRLISSCITARRFKLVNNLLNVLKSEKAVAGLSFNAAMKAYNKLYMYSSAVNIFQIMKSSSVKLDSESYAHAMEAYFKLGKNETVVSLFHEFESSEIEKASF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G032170
TK1151 IDTkA06G032170
OH-1004 IDLXL04_011017
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)54.200
Protein coverage (%)TK1151 51.684 / OH-1004 51.888
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G032170
LocationChr06:8737206-8739023 (+)
DescriptionSimilar to At5g13770: Pentatricopeptide repeat-containing protein At5g13770, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g13770 Pentatricopeptide repeat-containing protein At5g13770, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011017 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006417 regulation of translation Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0010239 chloroplast mRNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0042644 chloroplast nucleoid Cellular Component
GO:0042651 thylakoid membrane Cellular Component
KEGG gene cross-reference
ath:AT3G22470
ath:AT5G13770
ath:AT5G42310
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.702
Rank 1 · TkA06G032170 · TK1151
Plastid0.172
Rank 2 · TkA06G032170 · TK1151
Nucleus0.065
Rank 3 · TkA06G032170 · TK1151
Cytoplasm0.028
Rank 4 · TkA06G032170 · TK1151
Cell membrane0.008
Rank 5 · TkA06G032170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02284COX5A81-139 aa
PF13762MNE183-139 aa
PF13041PPR_287-101 aa
PF08579RPM2122-164 aa
PF13812PPR_3123-154 aa
PF13041PPR_2125-155 aa
PF29070MSC6_N134-221 aa
PF13812PPR_3143-199 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G032170PF02284COX5A811390.2412.2
TkA06G032170PF13762MNE1831390.0001222.8
TkA06G032170PF13041PPR_2871015e-44148.9
TkA06G032170PF08579RPM21221640.3611.9
TkA06G032170PF13812PPR_31231541.7e-2383.2
TkA06G032170PF13041PPR_21251555e-44148.9
TkA06G032170PF29070MSC6_N1342214.3e-29102.5
TkA06G032170PF13812PPR_31431991.7e-2383.2
TkA06G032170PF17177PPR_long1502531.3e-1454.8
TkA06G032170PF28753RMD9_N1502540.06513.8
TkA06G032170PF13041PPR_21611835e-44148.9
TkA06G032170PF08579RPM21611910.3611.9
TkA06G032170PF23276TPR_241712287.8e-1555.7
TkA06G032170PF06239ECSIT_N1732230.04213.8
TkA06G032170PF13041PPR_21912275e-44148.9
TkA06G032170PF01535PPR1912194.6e-39130.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q66GP4Arabidopsis thalianasp|Q66GP4|PP379_ARATH Pentatricopeptide repeat-containing protein At5g13770, chloroplastic38.400%Swiss-ProtMedium

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