TkA06G031920 | RubberDandelionOmics

Gene overview

TkA06G031920

Reference: TK1151 Chr: Chr06 Coordinates: 8675780-8677553 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1605 bp · TkA06G031920|TK1151|cDNA

ATCTAATCATATTTAACTTTCACACCTAATGCTTTTAAATATTCGTTCTCCATGCACCAATAAATGCCACTTGTTGATTCTTTTGTTTCAACCCTCCCCTACTCCCATATACAAAATCTCTTCTCAGGTTCTCCCTCTCTATCGATCTCCACGATTACACCGTATCTCACAAATGGAGAAATCTCGAGTTACGGAAATCCAAGTTCGAATCGACTGTAATGGGTGCGTTCAGAAGATTAAGAAGGCTCTGAATGGCATCA...

CDS

Download CDS FASTA

1296 bp · TkA06G031920|TK1151|CDS

ATGCTTTTAAATATTCGTTCTCCATGCACCAATAAATGCCACTTGTTGATTCTTTTGTTTCAACCCTCCCCTACTCCCATATACAAAATCTCTTCTCAGGTTCTCCCTCTCTATCGATCTCCACGATTACACCGTATCTCACAAATGGAGAAATCTCGAGTTACGGAAATCCAAGTTCGAATCGACTGTAATGGGTGCGTTCAGAAGATTAAGAAGGCTCTGAATGGCATCAAGGGCATACAGGATATCTATATCGACAT...

Protein

Download Protein FASTA

431 aa · TkA06G031920|TK1151|PROTEIN

MLLNIRSPCTNKCHLLILLFQPSPTPIYKISSQVLPLYRSPRLHRISQMEKSRVTEIQVRIDCNGCVQKIKKALNGIKGIQDIYIDIAQQKLTVIGWADPEKIVKALKKTRKAATICSESEPPPPPPTEPPSEDGAPPPDPASNPPPAEPVPPPEPVEPPKEPENLHPESTTEPPHSPPPPPAPAAQEPPSTDPTPLEAEEVHVVHHYPPNHGHRRDRVSNASVKHYSSPVYKNEPPQPIQVNHRYSTYKPTPYVTEYKH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G031920`
TK1151 ID	TkA06G031920
OH-1004 ID	LXL04_026011
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G031920

Location Chr06:8675780-8677553 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39700`	Heavy-metal-binding protein.	No verified direct reference in this release
`At4g35060`	Heavy-metal-binding protein.	No verified direct reference in this release
`At4g38580`	Heavy-metal-binding protein.	Metallochaperone-like genes in Arabidopsis thaliana.2010 · DOI: 10.1039/c003484c
`At1g06330`	Heavy-metal-binding protein.	No verified direct reference in this release
`At5g66110`	Heavy-metal-binding protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026011 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G56891

ath:AT4G08570

ath:AT4G35060

ath:AT4G39700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.464

Rank 1 · TkA06G031920 · TK1151

Cytoplasm0.359

Rank 2 · TkA06G031920 · TK1151

Nucleus0.333

Rank 3 · TkA06G031920 · TK1151

Endoplasmic reticulum0.058

Rank 4 · TkA06G031920 · TK1151

Golgi apparatus0.026

Rank 5 · TkA06G031920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00403HMA59-110 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G031920	`PF00403`	HMA	59	110	7.6e-13	49.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O65657`	Arabidopsis thaliana	sp\|O65657\|HIP23_ARATH Heavy metal-associated isoprenylated plant protein 23	49.200%	Swiss-Prot	Low
`O49613`	Arabidopsis thaliana	sp\|O49613\|HIP25_ARATH Heavy metal-associated isoprenylated plant protein 25	40.000%	Swiss-Prot	Low
`Q9SZN7`	Arabidopsis thaliana	sp\|Q9SZN7\|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26	34.400%	Swiss-Prot	Low
`F4IC29`	Arabidopsis thaliana	sp\|F4IC29\|HIP28_ARATH Heavy metal-associated isoprenylated plant protein 28	41.000%	Swiss-Prot	Low
`Q67ZW1`	Arabidopsis thaliana	sp\|Q67ZW1\|HIP27_ARATH Heavy metal-associated isoprenylated plant protein 27	35.600%	Swiss-Prot	Low

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