TkA06G031300 | RubberDandelionOmics

Gene overview

TkA06G031300

Reference: TK1151 Chr: Chr06 Coordinates: 8533852-8536042 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1909 bp · TkA06G031300|TK1151|cDNA

CCAAAACGTGGCAATCCAATCGATCTGCGTGCAAATTAATCTTCCATCGTCTTAGGTTTTCAAGAAAAAGATTGTGCAGTCATCGCACTCTTCTTCTACGAATCATTATCATGTAGAATTGGGGACAATTTGAACCGATTTTGTGAAAAACGGAAGATATCCTATTTTATGTTACAAATCGTTTTTCTCAAGTTGTAGCTTTACTTGCTTAGTATGTCCTGACTGTTGCGATCTATTTCATTGCAGTTTTTCGAGCCAAA...

CDS

Download CDS FASTA

1464 bp · TkA06G031300|TK1151|CDS

ATGCCTGTGAATAAAAAACTTCATCGACGTAGAAAGCGTTCCATTTCCGGTCATGGCAAAAGTAGAATGAATGTAGAAGACGATAGACTAAGCAGCTTGCCAGATGAACTCATCCTTAAAATCCTTTCTTTAATCAGCATCAAACAAGCTATCCAAACCAGTGTTTTATCAACTAGATGGAGGTCAATCTGGACTTCAATTTGTTGTCTCAATTTCTCAAGTGACAATATCGTTCCTAATTTTGTTTCCAATGTTCTTTC...

Protein

Download Protein FASTA

487 aa · TkA06G031300|TK1151|PROTEIN

MPVNKKLHRRRKRSISGHGKSRMNVEDDRLSSLPDELILKILSLISIKQAIQTSVLSTRWRSIWTSICCLNFSSDNIVPNFVSNVLSHRNNQMQVSSVKLGWISHDQHLIKEILDYAFSHNVPQVTITCDDHESIVKFPLSLFTSPSLKHLTLTGPLSASSSFILRPTLDLPSLTTLHLDHITMSNNHNDIFSMCTNLKNLSLKGCKLMRTKVLSICHPRLSNLTLQHTYWWMEAINVVAPQLKNLTIINCYGKHLISTP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G031300`
TK1151 ID	TkA06G031300
OH-1004 ID	LXL04_026022
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.700
Protein coverage (%)	TK1151 76.797 / OH-1004 92.099 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G031300

Location Chr06:8533852-8536042 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02910`	F-box/LRR-repeat protein At5g02910.	No verified direct reference in this release
`At3g51530`	F-box/FBD/LRR-repeat protein At3g51530.	No verified direct reference in this release
`At5g56420`	F-box/FBD/LRR-repeat protein At5g56420.	No verified direct reference in this release
`At5g02920`	F-box/LRR-repeat protein 25.	No verified direct reference in this release
`At3g26922`	F-box/LRR-repeat protein At3g26922.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_026022 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source) No functional description available

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.901

Rank 1 · TkA06G031300 · TK1151

Cytoplasm0.140

Rank 2 · TkA06G031300 · TK1151

Cell membrane0.036

Rank 3 · TkA06G031300 · TK1151

Endoplasmic reticulum0.025

Rank 4 · TkA06G031300 · TK1151

Plastid0.013

Rank 5 · TkA06G031300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box30-68 aa

PF12937F-box-like30-63 aa

PF13306LRR_5111-226 aa

PF13306LRR_5387-395 aa

PF00646F-box455-465 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G031300	`PF00646`	F-box	30	68	1.3e-08	35.1
TkA06G031300	`PF12937`	F-box-like	30	63	0.00063	20.2
TkA06G031300	`PF13306`	LRR_5	111	226	0.25	12.0
TkA06G031300	`PF13306`	LRR_5	387	395	0.25	12.0
TkA06G031300	`PF00646`	F-box	455	465	1.3e-08	35.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LYZ4`	Arabidopsis thaliana	sp\|Q9LYZ4\|FBL79_ARATH F-box/LRR-repeat protein At5g02910	28.100%	Swiss-Prot	Low
`Q501E9`	Arabidopsis thaliana	sp\|Q501E9\|FDL20_ARATH F-box/FBD/LRR-repeat protein At3g51530	30.300%	Swiss-Prot	Low
`Q9FM89`	Arabidopsis thaliana	sp\|Q9FM89\|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420	28.000%	Swiss-Prot	Low
`Q1PE04`	Arabidopsis thaliana	sp\|Q1PE04\|FBL25_ARATH F-box/LRR-repeat protein 25	28.900%	Swiss-Prot	Low
`Q9LJF8`	Arabidopsis thaliana	sp\|Q9LJF8\|FBL47_ARATH F-box/LRR-repeat protein At3g26922	28.700%	Swiss-Prot	Low

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