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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G031180
Reference: TK1151 Chr: Chr06 Coordinates: 8500870-8502624 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1551 bp · TkA06G031180|TK1151|cDNA

ATGATTTATCACAATGCTCCCCAGCAGCAGCTATCTCTCTACCAATTTCTCCTCCTCGCCGGCCGCCGGATCAAACCCCTGCAACAAGTTCACGCCCAAATCATCTTATCCGGCAAAACTAGCTCTCTCCCCCTTCTCACCAAACTCCTCACATCGGCCTGCGCAGCAGAGGCAATCATCTACACCCGTCAGCTCCTCTTCTCCATCGCCAACCCTGATTCTTTCCTCTTCAGTTCCGCTGCGTTGGTCAGTTTTTATGC...

CDS

Download CDS FASTA

1551 bp · TkA06G031180|TK1151|CDS

ATGATTTATCACAATGCTCCCCAGCAGCAGCTATCTCTCTACCAATTTCTCCTCCTCGCCGGCCGCCGGATCAAACCCCTGCAACAAGTTCACGCCCAAATCATCTTATCCGGCAAAACTAGCTCTCTCCCCCTTCTCACCAAACTCCTCACATCGGCCTGCGCAGCAGAGGCAATCATCTACACCCGTCAGCTCCTCTTCTCCATCGCCAACCCTGATTCTTTCCTCTTCAGTTCCGCTGCGTTGGTCAGTTTTTATGC...

Protein

Download Protein FASTA

516 aa · TkA06G031180|TK1151|PROTEIN

MIYHNAPQQQLSLYQFLLLAGRRIKPLQQVHAQIILSGKTSSLPLLTKLLTSACAAEAIIYTRQLLFSIANPDSFLFSSAALVSFYAKCNKLDVAHKLFDEMPEKTLVAWNSLISGYEQNGHAEKSISLFHKMKNSGVEFDLVTLVSILSACSQLGALSLGTWIHNYITSNLHINTTIATSLINMYGRCGDVIKARKVFDSLNQQNVVTWTSMISTYGINGYGHEAINIYHLMKLHGPPPNSITFTAILSSCAHSGLISE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G031180
TK1151 IDTkA06G031180
OH-1004 IDLXL04_018443
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)43.700
Protein coverage (%)TK1151 95.349 / OH-1004 84.103
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G031180
LocationChr06:8500870-8502624 (-)
DescriptionSimilar to PCMP-H28: Pentatricopeptide repeat-containing protein At4g21065
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g33760 Pentatricopeptide repeat-containing protein At2g33760. No verified direct reference in this release
At4g30700 Pentatricopeptide repeat-containing protein At4g30700. No verified direct reference in this release
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release
At2g01510 Pentatricopeptide repeat-containing protein At2g01510, mitochondrial. No verified direct reference in this release
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018443 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G59720
ath:AT1G74630
ath:AT2G01510
ath:AT4G21065
ath:AT5G48910
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.609
Rank 1 · TkA06G031180 · TK1151
Plastid0.218
Rank 2 · TkA06G031180 · TK1151
Nucleus0.056
Rank 3 · TkA06G031180 · TK1151
Cytoplasm0.039
Rank 4 · TkA06G031180 · TK1151
Peroxisome0.005
Rank 5 · TkA06G031180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00383dCMP_cyt_deam_176-153 aa
PF17177PPR_long80-157 aa
PF01535PPR81-105 aa
PF13812PPR_381-116 aa
PF17049AEP181-117 aa
PF13041PPR_282-105 aa
PF12854PPR_182-102 aa
PF24603TPR_3087-106 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G031180PF00383dCMP_cyt_deam_1761530.03514.7
TkA06G031180PF17177PPR_long801571.7e-0731.5
TkA06G031180PF01535PPR811055.1e-38127.4
TkA06G031180PF13812PPR_3811165.4e-1349.5
TkA06G031180PF17049AEP1811170.07712.8
TkA06G031180PF13041PPR_2821051.5e-31108.9
TkA06G031180PF12854PPR_1821024.1e-2175.1
TkA06G031180PF24603TPR_30871060.001519.6
TkA06G031180PF13041PPR_21071531.5e-31108.9
TkA06G031180PF12854PPR_11071344.1e-2175.1
TkA06G031180PF01535PPR1081385.1e-38127.4
TkA06G031180PF24603TPR_301082030.001519.6
TkA06G031180PF23276TPR_241102013.6e-0730.9
TkA06G031180PF29070MSC6_N1111970.001618.3
TkA06G031180PF13812PPR_31281605.4e-1349.5
TkA06G031180PF20431E_motif1291391.1e-1455.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P93011Arabidopsis thalianasp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g3376054.500%Swiss-ProtHigh
Q9SUH6Arabidopsis thalianasp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g3070046.500%Swiss-ProtMedium
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic43.300%Swiss-ProtMedium
Q9ZVF4Arabidopsis thalianasp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510, mitochondrial43.600%Swiss-ProtMedium
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914244.200%Swiss-ProtMedium

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