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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G028680
Reference: TK1151 Chr: Chr06 Coordinates: 7745514-7746610 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

942 bp · TkA06G028680|TK1151|cDNA

ATGGTATTTGGATTGGTGGGTATGGTAATTAAGCCTTTTTTACTTTTTAAACTATCTTGTATGGCTTGTTTGAGAGGAACTTCTTTAGTTATAAACACTTGGGTTGACGTTTTGAGTGCTTCTATCTTCTTCAATGTAAACGTATTTTGGAGATTTATGATTTGGACTGTATCTATAATCACTCTACCGTTACGTGCTCTTGGTGCACTACATAGGGAAAAACAGTTGCAGGCGCGACTTAGTGAACTACAAGAAAGATT...

CDS

Download CDS FASTA

942 bp · TkA06G028680|TK1151|CDS

ATGGTATTTGGATTGGTGGGTATGGTAATTAAGCCTTTTTTACTTTTTAAACTATCTTGTATGGCTTGTTTGAGAGGAACTTCTTTAGTTATAAACACTTGGGTTGACGTTTTGAGTGCTTCTATCTTCTTCAATGTAAACGTATTTTGGAGATTTATGATTTGGACTGTATCTATAATCACTCTACCGTTACGTGCTCTTGGTGCACTACATAGGGAAAAACAGTTGCAGGCGCGACTTAGTGAACTACAAGAAAGATT...

Protein

Download Protein FASTA

313 aa · TkA06G028680|TK1151|PROTEIN

MVFGLVGMVIKPFLLFKLSCMACLRGTSLVINTWVDVLSASIFFNVNVFWRFMIWTVSIITLPLRALGALHREKQLQARLSELQERLDSITWERKELQEHVKVAIKEHEMMEMILGELEDEHDVAIDRIKALEAEVQNLKDENLRLKEIDGKSHLDHAKLSSYTKDKIPISPWKSDHYKDDFNYENKVHVIAPNVCTDNDLGQRREVAVSQSLFSAILSVIVGMIIWEAKDPCMPLVTALLMVVGMSLKNVVRFFSTIKN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G028680
TK1151 IDTkA06G028680
OH-1004 IDLXL04_026073
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G028680
LocationChr06:7745514-7746610 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026073 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.453
Rank 1 · TkA06G028680 · TK1151
Nucleus0.194
Rank 2 · TkA06G028680 · TK1151
Golgi apparatus0.124
Rank 3 · TkA06G028680 · TK1151
Cytoplasm0.113
Rank 4 · TkA06G028680 · TK1151
Plastid0.110
Rank 5 · TkA06G028680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23177bHLH_IRO362-100 aa
PF05852DUF84864-138 aa
PF11932DUF345068-140 aa
PF30842LEKR168-146 aa
PF27557CC1_STRIPAK69-91 aa
PF23991DUF731069-91 aa
PF27921MIPOL1_C69-94 aa
PF28572PPI_helical70-133 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G028680PF23177bHLH_IRO3621000.2412.5
TkA06G028680PF05852DUF848641380.2212.4
TkA06G028680PF11932DUF3450681400.06113.3
TkA06G028680PF30842LEKR1681460.5111.4
TkA06G028680PF27557CC1_STRIPAK69910.1213.2
TkA06G028680PF23991DUF731069911.410.1
TkA06G028680PF27921MIPOL1_C69944.38.1
TkA06G028680PF28572PPI_helical701330.07713.1
TkA06G028680PF20537DUF675270840.08413.4
TkA06G028680PF04977DivIC701020.3411.5
TkA06G028680PF16740SKA2701120.5210.8
TkA06G028680PF10146zf-C4H2711570.02715.7
TkA06G028680PF18904DUF5660721100.8710.5
TkA06G028680PF28726CCDC110731600.04613.3
TkA06G028680PF02370M73880.1413.5
TkA06G028680PF23177bHLH_IRO3731470.2412.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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