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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G028010
Reference: TK1151 Chr: Chr06 Coordinates: 7577643-7579971 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1503 bp · TkA06G028010|TK1151|cDNA

TAATTACATAAATTACAGAATACTTTACCATAGGTAATTAGCCTAAAACCTCTTCTCGCCTCTATAGGGTTTAACATATCCGGAGTACCAGTGGGAATCGCCGGAGGACAGATGGCAACCATGTTAAGGCGTCTCCTTTCCCCGAAAGGGATGGGAAACCTCCACCGTTCTATTCAACGCAGTCGATTCAGTGATCCTTCTAGCACCCCTTTTCTGTTTCAATTTCTCTCCAGAAACCTCCATACTATTGTTTCCCGGAA...

CDS

Download CDS FASTA

1050 bp · TkA06G028010|TK1151|CDS

ATGGCAACCATGTTAAGGCGTCTCCTTTCCCCGAAAGGGATGGGAAACCTCCACCGTTCTATTCAACGCAGTCGATTCAGTGATCCTTCTAGCACCCCTTTTCTGTTTCAATTTCTCTCCAGAAACCTCCATACTATTGTTTCCCGGAACATGTGTTCCGTTGCTAATTACGAGCCGAACCACGATTCTTCGGTCGCCGTGGCTTTGAATTTAGATAATCGTGTTCCCGCCACCGTCATCACTGGCTTCCTCGGTTCCGG...

Protein

Download Protein FASTA

349 aa · TkA06G028010|TK1151|PROTEIN

MATMLRRLLSPKGMGNLHRSIQRSRFSDPSSTPFLFQFLSRNLHTIVSRNMCSVANYEPNHDSSVAVALNLDNRVPATVITGFLGSGKTTLLNHILTAQHGKRIAVIENEFGEVDIDGSLVASHSSANEDIIMVSNGCLCCTVRGELVTMLLELVKKKRDKFDHIVIETTGLAKPGPVIETFSTDEQISRYIKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVSDGDLEALKKKVQHINGMAQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G028010
TK1151 IDTkA06G028010
OH-1004 IDLXL04_026088
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 98.567 / OH-1004 83.777
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G028010
LocationChr06:7577643-7579971 (-)
DescriptionSimilar to CBWD1: COBW domain-containing protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026088 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006882 intracellular zinc ion homeostasis Biological Process
GO:0051604 protein maturation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0016787 hydrolase activity Molecular Function
GO:0140827 zinc chaperone activity Molecular Function
KEGG gene cross-reference
hsa:150472
hsa:220869
hsa:445571
hsa:55871
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.525
Rank 1 · TkA06G028010 · TK1151
Plastid0.437
Rank 2 · TkA06G028010 · TK1151
Cytoplasm0.087
Rank 3 · TkA06G028010 · TK1151
Nucleus0.056
Rank 4 · TkA06G028010 · TK1151
Peroxisome0.028
Rank 5 · TkA06G028010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00437T2SSE65-109 aa
PF03193RsgA_GTPase67-100 aa
PF10412TrwB_AAD_bind70-133 aa
PF25199nSTAND_NTPase572-136 aa
PF00025Arf73-108 aa
PF13191AAA_1674-114 aa
PF13555AAA_2974-98 aa
PF09439SRPRB74-111 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G028010PF00437T2SSE651090.02514.0
TkA06G028010PF03193RsgA_GTPase671000.0002121.9
TkA06G028010PF10412TrwB_AAD_bind701330.001418.3
TkA06G028010PF25199nSTAND_NTPase5721360.002718.3
TkA06G028010PF00025Arf731080.01515.5
TkA06G028010PF13191AAA_16741140.01716.3
TkA06G028010PF13555AAA_2974980.01815.6
TkA06G028010PF09439SRPRB741110.06513.3
TkA06G028010PF02492cobW762612.9e-59200.4
TkA06G028010PF00009GTP_EFTU761022.8e-0524.5
TkA06G028010PF13476AAA_23761030.02316.1
TkA06G028010PF13173AAA_14761070.0514.3
TkA06G028010PF01637ATPase_2771070.0713.6
TkA06G028010PF02367TsaE77990.2512.0
TkA06G028010PF13401AAA_22781030.01916.0
TkA06G028010PF20720nSTAND3781050.03214.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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