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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G026180
Reference: TK1151 Chr: Chr06 Coordinates: 7061444-7064191 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1240 bp · TkA06G026180|TK1151|cDNA

TAAAGTTGCCACACATTAGATAACAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCTTTGGAAACACTTTCTTCCAATGAACTTCTCAACTTCATAATCTATGACACCATCTCTGCAACCCCTTTTAGCTGCAATGACTCCTCTGAAACCACAACTACTAACACTAATCCTTGTAGTAGCTTCTTCTTCCATCTCGAAAACGAAAACCCTAATCCTCCTCTAAATCAATTGTGCGAAGAA...

CDS

Download CDS FASTA

1062 bp · TkA06G026180|TK1151|CDS

ATGGCTTTGGAAACACTTTCTTCCAATGAACTTCTCAACTTCATAATCTATGACACCATCTCTGCAACCCCTTTTAGCTGCAATGACTCCTCTGAAACCACAACTACTAACACTAATCCTTGTAGTAGCTTCTTCTTCCATCTCGAAAACGAAAACCCTAATCCTCCTCTAAATCAATTGTGCGAAGAACTCTCAGGCGCTGCTGCCATGGAAATTATGAGTTCCAATTCATCTCTAACTTCGACCACTGCGAAAATGTC...

Protein

Download Protein FASTA

353 aa · TkA06G026180|TK1151|PROTEIN

MALETLSSNELLNFIIYDTISATPFSCNDSSETTTTNTNPCSSFFFHLENENPNPPLNQLCEELSGAAAMEIMSSNSSLTSTTAKMSMAVQAYCSGKIPEKNYINDNNSNNMNLGVQGGGKKKRRRRPRVSKNKEEAENQRMTHIAVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEAQKFILSQQQQQQEDEGGHNSKFTESSSPTPPFSQFFAYPQYTCSQIPNKYTSKSKAAIADI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G026180
TK1151 IDTkA06G026180
OH-1004 IDLXL04_026135
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G026180
LocationChr06:7061444-7064191 (-)
DescriptionSimilar to BHLH96: Transcription factor bHLH96
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g72210 Transcription factor bHLH96. No verified direct reference in this release
At5g46690 Transcription factor. No verified direct reference in this release
At1g22490 Transcription factor bHLH94. No verified direct reference in this release
At3g24140 Transcription activator.
Arabidopsis FAMA controls the final proliferation/differentiation switch during stomatal development.2006 · DOI: 10.1105/tpc.106.046136
Termination of asymmetric cell division and differentiation of stomata.2007 · DOI: 10.1038/nature05467
Deep functional redundancy between FAMA and FOUR LIPS in stomatal development.2014 · DOI: 10.1111/tpj.12489
Arabidopsis guard cell integrity involves the epigenetic stabilization of the FLP and FAMA transcription factor genes.2014 · DOI: 10.1111/tpj.12516
At5g65320 Transcription factor bHLH99. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026135 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0010052 guard cell differentiation Biological Process
GO:0010374 stomatal complex development Biological Process
GO:0010377 guard cell fate commitment Biological Process
GO:0010444 guard mother cell differentiation Biological Process
GO:0045597 positive regulation of cell differentiation Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0051782 negative regulation of cell division Biological Process
GO:0090547 response to low humidity Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G22490
ath:AT1G72210
ath:AT3G24140
ath:AT4G01460
ath:AT5G46690
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.965
Rank 1 · TkA06G026180 · TK1151
Cytoplasm0.099
Rank 2 · TkA06G026180 · TK1151
Cell membrane0.032
Rank 3 · TkA06G026180 · TK1151
Endoplasmic reticulum0.022
Rank 4 · TkA06G026180 · TK1151
Plastid0.014
Rank 5 · TkA06G026180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12455Dynactin62-97 aa
PF22694CtpB_N-like70-111 aa
PF22754bHLH-TF_ACT-like_plant71-91 aa
PF15360Apelin115-131 aa
PF22694CtpB_N-like132-185 aa
PF00010HLH140-191 aa
PF23177bHLH_IRO3146-203 aa
PF15360Apelin150-174 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G026180PF12455Dynactin62970.0314.3
TkA06G026180PF22694CtpB_N-like701110.411.9
TkA06G026180PF22754bHLH-TF_ACT-like_plant71917.5e-0626.7
TkA06G026180PF15360Apelin1151310.3712.0
TkA06G026180PF22694CtpB_N-like1321850.411.9
TkA06G026180PF00010HLH1401916.3e-1349.0
TkA06G026180PF23177bHLH_IRO31462030.001719.4
TkA06G026180PF15360Apelin1501740.3712.0
TkA06G026180PF12455Dynactin1521800.0314.3
TkA06G026180PF22694CtpB_N-like2042130.411.9
TkA06G026180PF22754bHLH-TF_ACT-like_plant2593367.5e-0626.7
TkA06G026180PF15360Apelin2662790.3712.0
TkA06G026180PF12455Dynactin2772980.0314.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C7T4Arabidopsis thalianasp|Q9C7T4|BH096_ARATH Transcription factor bHLH9659.000%Swiss-ProtMedium
Q56XR0Arabidopsis thalianasp|Q56XR0|BH071_ARATH Transcription factor bHLH7156.600%Swiss-ProtMedium
Q9SK91Arabidopsis thalianasp|Q9SK91|BH094_ARATH Transcription factor bHLH9455.900%Swiss-ProtMedium
Q56YJ8Arabidopsis thalianasp|Q56YJ8|FAMA_ARATH Transcription factor FAMA48.400%Swiss-ProtMedium
Q9FKQ6Arabidopsis thalianasp|Q9FKQ6|BH099_ARATH Transcription factor bHLH9942.100%Swiss-ProtMedium

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