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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G023840
Reference: TK1151 Chr: Chr06 Coordinates: 6481555-6482766 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1212 bp · TkA06G023840|TK1151|cDNA

ATGGAAACAGAATCACAACAAGAAGACACCAATCCAGAATGGGACCCAGAAGAAATCGAAACAATCTCCTCACTATTCAAACAAAGAATCCCTCAAAAACCGGGAAAAAAACCGCGAGAAAGACCACTTCCCCTCCCAATCCCACACAAACAACAACCACTCGGCCTTCCATCTTCAAAGAAATTCGCAAAAACCGTAAACACTTCAAGAAAATCACTATCCACCAAACTATACAAAAACCCAACATTCCTAATCTCTCT...

CDS

Download CDS FASTA

1212 bp · TkA06G023840|TK1151|CDS

ATGGAAACAGAATCACAACAAGAAGACACCAATCCAGAATGGGACCCAGAAGAAATCGAAACAATCTCCTCACTATTCAAACAAAGAATCCCTCAAAAACCGGGAAAAAAACCGCGAGAAAGACCACTTCCCCTCCCAATCCCACACAAACAACAACCACTCGGCCTTCCATCTTCAAAGAAATTCGCAAAAACCGTAAACACTTCAAGAAAATCACTATCCACCAAACTATACAAAAACCCAACATTCCTAATCTCTCT...

Protein

Download Protein FASTA

403 aa · TkA06G023840|TK1151|PROTEIN

METESQQEDTNPEWDPEEIETISSLFKQRIPQKPGKKPRERPLPLPIPHKQQPLGLPSSKKFAKTVNTSRKSLSTKLYKNPTFLISLAKQIKNLPPEKDVSTILNTYTRFLRKNSLSITVRELGHMGLPERALQIFCWVQTQPHLSPDDKLLASTVEVLARNHELKLSFKLEKFLSLSSQNVYEAVVKGFIKSGNLKLAYKLVITAKNRKIMVDSGVHAKLILEMGKNPDNYNHVRVLLEELGEREDLNLTQQDCTSIMK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G023840
TK1151 IDTkA06G023840
OH-1004 IDLXL04_026161
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 83.093
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G023840
LocationChr06:6481555-6482766 (-)
DescriptionSimilar to EMB975: Pentatricopeptide repeat-containing protein At2g01860
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g01860 Pentatricopeptide repeat-containing protein At2g01860. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026161 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0008380 RNA splicing Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010239 chloroplast mRNA processing Biological Process
GO:0042793 plastid transcription Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0042644 chloroplast nucleoid Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0003735 structural constituent of ribosome Molecular Function
KEGG gene cross-reference
ath:AT1G74850
ath:AT1G79490
ath:AT2G01860
ath:AT2G41720
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.730
Rank 1 · TkA06G023840 · TK1151
Plastid0.142
Rank 2 · TkA06G023840 · TK1151
Nucleus0.080
Rank 3 · TkA06G023840 · TK1151
Cytoplasm0.040
Rank 4 · TkA06G023840 · TK1151
Cell membrane0.009
Rank 5 · TkA06G023840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29235DUF852013-31 aa
PF17898GerD59-106 aa
PF23276TPR_2469-99 aa
PF29235DUF8520102-114 aa
PF01535PPR123-136 aa
PF13041PPR_2125-138 aa
PF23276TPR_24161-247 aa
PF17177PPR_long177-206 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G023840PF29235DUF852013310.211.9
TkA06G023840PF17898GerD591060.1213.1
TkA06G023840PF23276TPR_2469990.0001122.8
TkA06G023840PF29235DUF85201021140.211.9
TkA06G023840PF01535PPR1231361.2e-0938.5
TkA06G023840PF13041PPR_21251381e-0732.7
TkA06G023840PF23276TPR_241612470.0001122.8
TkA06G023840PF17177PPR_long1772060.01915.0
TkA06G023840PF13812PPR_31812113.2e-0524.6
TkA06G023840PF13041PPR_21822141e-0732.7
TkA06G023840PF29978ATP18_TPR1822020.04314.4
TkA06G023840PF01535PPR1832031.2e-0938.5
TkA06G023840PF12854PPR_11832030.1712.3
TkA06G023840PF17898GerD2102450.1213.1
TkA06G023840PF29978ATP18_TPR2342700.04314.4
TkA06G023840PF13812PPR_32442913.2e-0524.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q5XET4Arabidopsis thalianasp|Q5XET4|PP142_ARATH Pentatricopeptide repeat-containing protein At2g0186057.300%Swiss-ProtHigh

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