TkA06G021990 | RubberDandelionOmics

Gene overview

TkA06G021990

Reference: TK1151 Chr: Chr06 Coordinates: 6054179-6055068 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

381 bp · TkA06G021990|TK1151|cDNA

ATGGGCCCAGGCATACCCTCAAGACTCCACGCCTCCAATCGCACATTACCGATTTCAGACTTGCCAAGTTACCATCGGCCATCGCGATTTCAGACACCATCGCTGATCGCTCCAATCGGCAAGAAAGCCAAAGATCTGCTGACCAGAGACTACCTTTCCGATCAGAAATTTTCTGTTTCAACCACCAGTGTTAACGGAGTGGCAATTACTTCAACTGCAACAAAGAAAGGTGGCCTGTCAAGTGGAGATGTAGGAGCAGT...

CDS

Download CDS FASTA

381 bp · TkA06G021990|TK1151|CDS

ATGGGCCCAGGCATACCCTCAAGACTCCACGCCTCCAATCGCACATTACCGATTTCAGACTTGCCAAGTTACCATCGGCCATCGCGATTTCAGACACCATCGCTGATCGCTCCAATCGGCAAGAAAGCCAAAGATCTGCTGACCAGAGACTACCTTTCCGATCAGAAATTTTCTGTTTCAACCACCAGTGTTAACGGAGTGGCAATTACTTCAACTGCAACAAAGAAAGGTGGCCTGTCAAGTGGAGATGTAGGAGCAGT...

Protein

Download Protein FASTA

126 aa · TkA06G021990|TK1151|PROTEIN

MGPGIPSRLHASNRTLPISDLPSYHRPSRFQTPSLIAPIGKKAKDLLTRDYLSDQKFSVSTTSVNGVAITSTATKKGGLSSGDVGAVYKYNNTLIDVKFDTQSNVCFLLPHLPSTIRHNPSYSLSH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G021990`
TK1151 ID	TkA06G021990
OH-1004 ID	LXL04_026191
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G021990

Location Chr06:6054179-6055068 (+)

Description Similar to VDAC2: Mitochondrial outer membrane protein porin 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g67500`	Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules.	Voltage-dependent anion channel 2 of Arabidopsis thaliana (AtVDAC2) is involved in ABA-mediated early seedling development.2009 · DOI: 10.3390/ijms10062476 Molecular and genetic characterization of the gene family encoding the voltage-dependent anion channel in Arabidopsis.2011 · DOI: 10.1093/jxb/err113
`At3g49920`	Putative channel that allows diffusion of small hydrophilic molecules through membranes.	No verified direct reference in this release
`At5g15090`	Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0202200`	Forms a channel through the mitochondrial outer membrane that allows diffusion of small hydrophilic molecules.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026191 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009060 aerobic respiration Biological Process

GO:0009409 response to cold Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0010029 regulation of seed germination Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005741 mitochondrial outer membrane Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

KEGG gene cross-reference

ath:AT3G49920

ath:AT5G15090

ath:AT5G67500

dosa:Os03g0202200

sot:102603136

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.266

Rank 1 · TkA06G021990 · TK1151

Plastid0.233

Rank 2 · TkA06G021990 · TK1151

Cytoplasm0.163

Rank 3 · TkA06G021990 · TK1151

Extracellular0.094

Rank 4 · TkA06G021990 · TK1151

Nucleus0.094

Rank 5 · TkA06G021990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01459Porin_333-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G021990	`PF01459`	Porin_3	33	105	2e-14	54.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FJX3`	Arabidopsis thaliana	sp\|Q9FJX3\|VDAC2_ARATH Mitochondrial outer membrane protein porin 2	62.800%	Swiss-Prot	Medium
`Q9M2W6`	Arabidopsis thaliana	sp\|Q9M2W6\|VDAC5_ARATH Putative mitochondrial outer membrane protein porin 5	64.400%	Swiss-Prot	Medium
`Q9SMX3`	Arabidopsis thaliana	sp\|Q9SMX3\|VDAC3_ARATH Mitochondrial outer membrane protein porin 3	57.500%	Swiss-Prot	Medium
`Q84P97`	Oryza sativa subsp. japonica	sp\|Q84P97\|VDAC5_ORYSJ Mitochondrial outer membrane protein porin 5	59.300%	Swiss-Prot	Medium

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