TkA06G021640 | RubberDandelionOmics

Gene overview

TkA06G021640

Reference: TK1151 Chr: Chr06 Coordinates: 5938240-5940305 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

537 bp · TkA06G021640|TK1151|cDNA

ATGCAAACTCATCTTGATAAAGAATCAAAGAAGACATTTTTTGCTGGAAATGAAGAAACGGGGAAGCAGTTTTGTACCGAGAAGGCAAGGGAAGCATATGAAGCATACTCTCGAGCCTTGCTTGAGAAGTATGGGGATGATTTACGTGATCACGCAATTGATGATGTTGAACTTTGGAAGAAAACCCAAAGGGAGATAAGTAAAGGTTCGAAGACCAGTTACATGTATGGGGTTGGATCATCAGATCCGGAGTATGTTGT...

CDS

Download CDS FASTA

537 bp · TkA06G021640|TK1151|CDS

ATGCAAACTCATCTTGATAAAGAATCAAAGAAGACATTTTTTGCTGGAAATGAAGAAACGGGGAAGCAGTTTTGTACCGAGAAGGCAAGGGAAGCATATGAAGCATACTCTCGAGCCTTGCTTGAGAAGTATGGGGATGATTTACGTGATCACGCAATTGATGATGTTGAACTTTGGAAGAAAACCCAAAGGGAGATAAGTAAAGGTTCGAAGACCAGTTACATGTATGGGGTTGGATCATCAGATCCGGAGTATGTTGT...

Protein

Download Protein FASTA

178 aa · TkA06G021640|TK1151|PROTEIN

MQTHLDKESKKTFFAGNEETGKQFCTEKAREAYEAYSRALLEKYGDDLRDHAIDDVELWKKTQREISKGSKTSYMYGVGSSDPEYVVTGKSSTASCSSSSCESQHKVNELRIKLDTVEKDKLLMQEKLDNTERNAIEMQEKLENTERNAVEMKKKQDLMAAQLNQLMRQCGITLQNPV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G021640`
TK1151 ID	TkA06G021640
OH-1004 ID	LXL04_035122
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	84.000
Protein coverage (%)	TK1151 70.225 / OH-1004 19.640 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA06G021640`
Location	Chr06:5938240-5940305 (+)
Description	Similar to CIPK2: CBL-interacting protein kinase 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035122` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0007165 signal transduction Biological Process GO:0009737 response to abscisic acid Biological Process GO:0005634 nucleus Cellular Component GO:0004674 protein serine/threonine kinase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference	ath:AT5G45820 dosa:Os01g0206700 dosa:Os03g0339900 dosa:Os05g0332300 dosa:Os07g0678600 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.917

Rank 1 · TkA06G021640 · TK1151

Cytoplasm0.208

Rank 2 · TkA06G021640 · TK1151

Mitochondrion0.022

Rank 3 · TkA06G021640 · TK1151

Cell membrane0.014

Rank 4 · TkA06G021640 · TK1151

Extracellular0.009

Rank 5 · TkA06G021640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25762HAUS18-46 aa

PF09725Fra10Ac123-121 aa

PF04201TPD5225-46 aa

PF04201TPD5252-73 aa

PF20667Sec10_N95-160 aa

PF25762HAUS197-169 aa

PF09893DUF212099-161 aa

PF12560RAG1_imp_bd101-176 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G021640	`PF25762`	HAUS1	8	46	0.17	12.4
TkA06G021640	`PF09725`	Fra10Ac1	23	121	0.19	12.6
TkA06G021640	`PF04201`	TPD52	25	46	4.4	8.3
TkA06G021640	`PF04201`	TPD52	52	73	4.4	8.3
TkA06G021640	`PF20667`	Sec10_N	95	160	0.045	14.5
TkA06G021640	`PF25762`	HAUS1	97	169	0.17	12.4
TkA06G021640	`PF09893`	DUF2120	99	161	0.34	11.6
TkA06G021640	`PF12560`	RAG1_imp_bd	101	176	0.26	11.5
TkA06G021640	`PF24627`	PUMA_CC	103	152	0.12	13.1
TkA06G021640	`PF19148`	DUF5830	106	175	0.14	12.8
TkA06G021640	`PF04201`	TPD52	118	160	4.4	8.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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