TkA06G019270 | RubberDandelionOmics

Gene overview

TkA06G019270

Reference: TK1151 Chr: Chr06 Coordinates: 5290258-5291175 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

720 bp · TkA06G019270|TK1151|cDNA

TAACTGTACATCCTGCAACAGTCCAAAGAAAACCACCGTATAAATGACTAACTTTTTCACTCAAATTAACACAACCTAATTCTCATAACCTCTTACGAAATCAGCTTCTTCAATGGCTTCAACAATGAAATACTCCATCATGTTCATATCTATGATCATCTTAAGTTTTGGGTTTCAATTAGCATCATCTGACCAGGGGATCGGAACCATCAATGACCCTCCATACTTACCTTCCGCATGTTACGGGTACCAAGATAAAG...

CDS

Download CDS FASTA

408 bp · TkA06G019270|TK1151|CDS

ATGGCTTCAACAATGAAATACTCCATCATGTTCATATCTATGATCATCTTAAGTTTTGGGTTTCAATTAGCATCATCTGACCAGGGGATCGGAACCATCAATGACCCTCCATACTTACCTTCCGCATGTTACGGGTACCAAGATAAAGGAGTTATGATCGCCGCCGCAAATCAAGATTTATGGCAAGGCGGAGCTGTTTGTGGAAAGCATTTCGAGGTGACTTGTACAGGTGGAACGAATCTGGGTACACCGCACCCTTG...

Protein

Download Protein FASTA

135 aa · TkA06G019270|TK1151|PROTEIN

MASTMKYSIMFISMIILSFGFQLASSDQGIGTINDPPYLPSACYGYQDKGVMIAAANQDLWQGGAVCGKHFEVTCTGGTNLGTPHPCTSSPTVTVMITDFCPPPGCKGNLDLSHEAFSSIADPASGGIKISYRQV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G019270`
TK1151 ID	TkA06G019270
OH-1004 ID	LXL04_026231
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.500
Protein coverage (%)	TK1151 99.259 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA06G019270`
Location	Chr06:5290258-5291175 (+)
Description	Similar to CjBAp12: EG45-like domain containing protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026231` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009627 systemic acquired resistance Biological Process GO:0010230 alternative respiration Biological Process GO:0071456 cellular response to hypoxia Biological Process GO:0005576 extracellular region Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0048046 apoplast Cellular Component GO:0051428 peptide hormone receptor binding Molecular Function
KEGG gene cross-reference	ath:AT2G18660 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.388

Rank 1 · TkA06G019270 · TK1151

Lysosome / Vacuole0.283

Rank 2 · TkA06G019270 · TK1151

Cytoplasm0.168

Rank 3 · TkA06G019270 · TK1151

Endoplasmic reticulum0.138

Rank 4 · TkA06G019270 · TK1151

Cell membrane0.063

Rank 5 · TkA06G019270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19700DUF61986-52 aa

PF29515Expansin_N40-126 aa

PF22514EXPB1_D141-104 aa

PF03330DPBB_154-132 aa

PF17219YAF2_RYBP93-102 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G019270	`PF19700`	DUF6198	6	52	0.14	12.6
TkA06G019270	`PF29515`	Expansin_N	40	126	8.5e-07	29.9
TkA06G019270	`PF22514`	EXPB1_D1	41	104	5.1e-05	24.4
TkA06G019270	`PF03330`	DPBB_1	54	132	2.1e-15	57.4
TkA06G019270	`PF17219`	YAF2_RYBP	93	102	0.34	11.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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