TkA06G018340 | RubberDandelionOmics

Gene overview

TkA06G018340

Reference: TK1151 Chr: Chr06 Coordinates: 5030185-5031342 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

787 bp · TkA06G018340|TK1151|cDNA

ACCAATCTTACGCAGATATCCCAACCTATCTCACATATCTATGTCAAAAGAAGAAATGGGTTTATCTATAAACGTCAATGGTGAGTCGAAAGTGCCTCCAGGGTTTCGGTTTCACCCTACGGAAGAAGAACTTCTTCATTACTATCTGAGAAAGAAAGTTGCTTATGAAAAGATCGATCTTGATGTTATTCGAGAGGTTGATCTTAATAAGCTTGAACCCTGGGACATTCAAGACAAATGCAATATAGGCACTACGACGC...

CDS

Download CDS FASTA

747 bp · TkA06G018340|TK1151|CDS

ATGTCAAAAGAAGAAATGGGTTTATCTATAAACGTCAATGGTGAGTCGAAAGTGCCTCCAGGGTTTCGGTTTCACCCTACGGAAGAAGAACTTCTTCATTACTATCTGAGAAAGAAAGTTGCTTATGAAAAGATCGATCTTGATGTTATTCGAGAGGTTGATCTTAATAAGCTTGAACCCTGGGACATTCAAGACAAATGCAATATAGGCACTACGACGCAAAATGATTGGTACTTTTTTAGTCACAAAGACAAGAAATA...

Protein

Download Protein FASTA

249 aa · TkA06G018340|TK1151|PROTEIN

MSKEEMGLSINVNGESKVPPGFRFHPTEEELLHYYLRKKVAYEKIDLDVIREVDLNKLEPWDIQDKCNIGTTTQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVVQSSVKRIGMRKTLVFYKGRAPHGQKSDYIMHEYRLDDIQDSNASNLCDYAHEEGWVVCRVFKKKNYHKSIESPQRSLHDSMENRARLQSLNKDGVLEQLLAYMGSRSSCKQEIENFTTTQQFVHLPRLDGSTHMTASL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G018340`
TK1151 ID	TkA06G018340
OH-1004 ID	LXL04_026244
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 68.595 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G018340

Location Chr06:5030185-5031342 (-)

Description Similar to NAC043: NAC domain-containing protein 43

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32770`	Transcriptional activator of genes involved in biosynthesis of secondary walls.	SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fibers of Arabidopsis.2006 · DOI: 10.1105/tpc.106.047399 NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis.2007 · DOI: 10.1105/tpc.106.047043 Two NAC domain transcription factors, SND1 and NST1, function redundantly in regulation of secondary wall synthesis in fibers of Arabidopsis.2007 · DOI: 10.1007/s00425-007-0498-y The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis.2007 · DOI: 10.1105/tpc.107.053678
`At2g46770`	Transcription activator of genes involved in the biosynthesis of secondary walls.	The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence.2005 · DOI: 10.1105/tpc.105.036004 NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis.2007 · DOI: 10.1105/tpc.106.047043 Two NAC domain transcription factors, SND1 and NST1, function redundantly in regulation of secondary wall synthesis in fibers of Arabidopsis.2007 · DOI: 10.1007/s00425-007-0498-y ZINC FINGER PROTEIN2 suppresses funiculus lignification to ensure seed loading efficiency in Arabidopsis.2025 · DOI: 10.1016/j.devcel.2025.01.021
`At3g61910`	Transcription activator of genes involved in biosynthesis of secondary walls.	The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence.2005 · DOI: 10.1105/tpc.105.036004
`At4g10350`	Transcription activator.	No verified direct reference in this release
`At1g33280`	Transcription activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026244 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010047 fruit dehiscence Biological Process

GO:0010628 positive regulation of gene expression Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048759 xylem vessel member cell differentiation Biological Process

GO:0048829 root cap development Biological Process

GO:0071555 cell wall organization Biological Process

GO:1901348 positive regulation of secondary cell wall biogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

KEGG gene cross-reference

ath:AT1G32770

ath:AT2G18060

ath:AT2G46770

ath:AT3G61910

ath:AT4G10350

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.951

Rank 1 · TkA06G018340 · TK1151

Cytoplasm0.107

Rank 2 · TkA06G018340 · TK1151

Cell membrane0.037

Rank 3 · TkA06G018340 · TK1151

Endoplasmic reticulum0.028

Rank 4 · TkA06G018340 · TK1151

Plastid0.014

Rank 5 · TkA06G018340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02365NAM19-146 aa

PF30049POG1_N25-68 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G018340	`PF02365`	NAM	19	146	6.2e-45	153.3
TkA06G018340	`PF30049`	POG1_N	25	68	0.12	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LPI7`	Arabidopsis thaliana	sp\|Q9LPI7\|NAC12_ARATH NAC domain-containing protein 12	63.500%	Swiss-Prot	High
`Q84WP6`	Arabidopsis thaliana	sp\|Q84WP6\|NAC43_ARATH NAC domain-containing protein 43	63.000%	Swiss-Prot	High
`Q9M274`	Arabidopsis thaliana	sp\|Q9M274\|NAC66_ARATH NAC domain-containing protein 66	60.200%	Swiss-Prot	High
`Q9SV87`	Arabidopsis thaliana	sp\|Q9SV87\|BRN2_ARATH Protein BEARSKIN2	64.700%	Swiss-Prot	High
`Q9C878`	Arabidopsis thaliana	sp\|Q9C878\|BRN1_ARATH Protein BEARSKIN1	71.600%	Swiss-Prot	Medium

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