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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G018020
Reference: TK1151 Chr: Chr06 Coordinates: 4929724-4930526 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

722 bp · TkA06G018020|TK1151|cDNA

CCTGTCCTTCCTTCCAGATCGTATAAAAAGGGGAGTATATAACAGATAAGCATTACTCACTCGCTACTCGCTTTCAACATTTGCAAACACGCACTAGAAAAAGAAAACAACGAAGGAATGTCGGAAGAAGGAAGAAGGAGCAAAAATGAAGGTCGGAAGAGATTCACGGATAAACAGATAAGCTTTCTAGAGTACATGTATGAAACTGAGTCGCGTCCTGCGTTACGGATGAAACACCAGTTAGCGAACAAGCTCGGGCT...

CDS

Download CDS FASTA

513 bp · TkA06G018020|TK1151|CDS

ATGTCGGAAGAAGGAAGAAGGAGCAAAAATGAAGGTCGGAAGAGATTCACGGATAAACAGATAAGCTTTCTAGAGTACATGTATGAAACTGAGTCGCGTCCTGCGTTACGGATGAAACACCAGTTAGCGAACAAGCTCGGGCTTCATCCTCGCCAGGTGGCGATTTGGTTTCAGAACAAAAGAGCGCGATCGAAATCAAGGCAGATTGAGCAAGAGTACAATACCTTGAAGCACGATTATGATACGCTAGCGTCGAAATC...

Protein

Download Protein FASTA

170 aa · TkA06G018020|TK1151|PROTEIN

MSEEGRRSKNEGRKRFTDKQISFLEYMYETESRPALRMKHQLANKLGLHPRQVAIWFQNKRARSKSRQIEQEYNTLKHDYDTLASKSESLKKENQALLNQLEMLRNAANNTTGNSSSASDESDERRENNENVEIMVPFLYLGDESKFAEIEEWEEGGCSLGMDLQTWLEF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G018020
TK1151 IDTkA06G018020
OH-1004 IDLXL04_026250
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G018020
LocationChr06:4929724-4930526 (-)
DescriptionSimilar to ATHB-7: Homeobox-leucine zipper protein ATHB-7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g61890 Probable transcription activator that may act as growth regulators in response to water deficit.
Structure and expression of the Arabidopsis thaliana homeobox gene Athb-12.2001 · DOI: 10.1006/bbrc.2001.4904
At2g46680 Probable transcription activator that may act as growth regulators in response to water deficit.
The Arabidopsis homeobox gene ATHB-7 is induced by water deficit and by abscisic acid.1996 · DOI: 10.1046/j.1365-313x.1996.10020375.x

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q9XH35 Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. No verified direct reference in this release
Os09g0528200 Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. No verified direct reference in this release
UniProt: Q01IK0 Probable transcription factor. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026250 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006970 response to osmotic stress Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009615 response to virus Biological Process
GO:0009725 response to hormone Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0033993 response to lipid Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
KEGG gene cross-reference
ath:AT2G46680
ath:AT3G61890
dosa:Os02g0649300
dosa:Os09g0528200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.981
Rank 1 · TkA06G018020 · TK1151
Cytoplasm0.082
Rank 2 · TkA06G018020 · TK1151
Cell membrane0.017
Rank 3 · TkA06G018020 · TK1151
Endoplasmic reticulum0.009
Rank 4 · TkA06G018020 · TK1151
Plastid0.007
Rank 5 · TkA06G018020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00046Homeodomain12-65 aa
PF30854Par-4_C24-45 aa
PF05920Homeobox_KN37-63 aa
PF01496V_ATPase_I38-128 aa
PF26212Phage_T7_Gp1539-128 aa
PF08172CASP_C58-131 aa
PF00170bZIP_158-106 aa
PF25450Rab11-FIP359-127 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G018020PF00046Homeodomain12653.5e-1762.7
TkA06G018020PF30854Par-4_C24450.07513.9
TkA06G018020PF05920Homeobox_KN37633.5e-0524.3
TkA06G018020PF01496V_ATPase_I381280.07811.6
TkA06G018020PF26212Phage_T7_Gp15391280.008915.0
TkA06G018020PF08172CASP_C581310.002517.9
TkA06G018020PF00170bZIP_1581060.4511.4
TkA06G018020PF25450Rab11-FIP3591270.0005121.1
TkA06G018020PF28907ZapB_rel63830.8411.0
TkA06G018020PF25966Myo5a641230.01516.1
TkA06G018020PF04977DivIC641050.6410.6
TkA06G018020PF24423OVT1651340.01116.9
TkA06G018020PF06156YabA651270.1213.7
TkA06G018020PF24915Spectrin_SESTD1661170.0814.1
TkA06G018020PF02183HALZ671061.9e-1247.8
TkA06G018020PF30854Par-4_C671040.07513.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M276Arabidopsis thalianasp|Q9M276|ATB12_ARATH Homeobox-leucine zipper protein ATHB-1258.000%Swiss-ProtLow
P46897Arabidopsis thalianasp|P46897|ATHB7_ARATH Homeobox-leucine zipper protein ATHB-762.100%Swiss-ProtLow
Q9XH35Oryza sativa subsp. indicasp|Q9XH35|HOX6_ORYSI Homeobox-leucine zipper protein HOX652.200%Swiss-ProtMedium
Q651Z5Oryza sativa subsp. japonicasp|Q651Z5|HOX6_ORYSJ Homeobox-leucine zipper protein HOX652.200%Swiss-ProtMedium
Q01IK0Oryza sativa subsp. indicasp|Q01IK0|HOX22_ORYSI Homeobox-leucine zipper protein HOX2244.100%Swiss-ProtMedium

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