TkA06G017200 | RubberDandelionOmics

Gene overview

TkA06G017200

Reference: TK1151 Chr: Chr06 Coordinates: 4670872-4672692 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1559 bp · TkA06G017200|TK1151|cDNA

GTAACATTGACCCAATGTAAAAATGTTTCATAATTTTACATAATTAATGTTCAAAAAGTTATATAAGTTTTACAATAAATCGTGATATTTTGAATGTGACTTTTTTTTCTTCTAAGAGTTGGCCCAACAATACCGTCGTGGCAATCGTGTTTACGTGTAGCCAAAACATGTGGATTTTGCGGAATGCATGCTACTTTCGTCGATGTCGACTTCACAAGCATTCATCAACAATTACGGACTTCAATCCTCATGGCCACAAA...

CDS

Download CDS FASTA

777 bp · TkA06G017200|TK1151|CDS

ATGGAAGCTGTTCGTGCTCCCGGTTTCTATAGTCGGCGGAGGCGTAGGGTTAGTTACCGGCTCAATTGGGCTGAGCTTTTGGTGGCTGGTCGTGTTCTCTCCTATTGGCTAAGCATGTTCAGGTTAACTAGGTCTGAGCGCGGCCAAAAACCGTCGTTGACTCTTCCCGTTTCGGCTTCTGTATCAACAGCGGCGGAAACTACTATAGATTTATCGGCGTTTGAGAGGGCTTCATCACCTGAAGAAATGGATACAGAGTT...

Protein

Download Protein FASTA

258 aa · TkA06G017200|TK1151|PROTEIN

MEAVRAPGFYSRRRRRVSYRLNWAELLVAGRVLSYWLSMFRLTRSERGQKPSLTLPVSASVSTAAETTIDLSAFERASSPEEMDTELQSTVLEENDPALIAPSVDIINEHTNNPQLMEEQDIPIGAATEIDQGNNCRSEVDQNPIETEPEPEDEDEPEQEPKPEAEDEAEPETEPEPDVIEVFWRLPTGDKIERRFSCTETLQSIYEFVDSSGVLDVGSYTLVTFFPRVLYGQDQLSSTLEELGLVHPQTSLFVELDW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G017200`
TK1151 ID	TkA06G017200
OH-1004 ID	LXL04_026271
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.100
Protein coverage (%)	TK1151 89.535 / OH-1004 77.966 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G017200

Location Chr06:4670872-4672692 (+)

Description Similar to PUX10: Plant UBX domain-containing protein 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10790`	Plant UBX domain-containing protein 10.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026271 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016192 vesicle-mediated transport Biological Process

GO:0036503 ERAD pathway Biological Process

GO:1905691 lipid droplet disassembly Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005811 lipid droplet Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0030674 protein-macromolecule adaptor activity Molecular Function

GO:0043130 ubiquitin binding Molecular Function

KEGG gene cross-reference

ath:AT4G00752

ath:AT4G10790

ath:AT4G11740

ath:AT4G23040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.509

Rank 1 · TkA06G017200 · TK1151

Nucleus0.323

Rank 2 · TkA06G017200 · TK1151

Endoplasmic reticulum0.130

Rank 3 · TkA06G017200 · TK1151

Golgi apparatus0.126

Rank 4 · TkA06G017200 · TK1151

Cell membrane0.118

Rank 5 · TkA06G017200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28211GlpR25-174 aa

PF05887Trypan_PARP137-177 aa

PF00789UBX176-255 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G017200	`PF28211`	GlpR	25	174	0.071	13.9
TkA06G017200	`PF05887`	Trypan_PARP	137	177	0.68	10.6
TkA06G017200	`PF00789`	UBX	176	255	5.7e-17	62.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M0N1`	Arabidopsis thaliana	sp\|Q9M0N1\|PUX10_ARATH Plant UBX domain-containing protein 10	45.000%	Swiss-Prot	Low

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