TkA06G016900 | RubberDandelionOmics

Gene overview

TkA06G016900

Reference: TK1151 Chr: Chr06 Coordinates: 4587187-4587564 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

378 bp · TkA06G016900|TK1151|cDNA

ATGGAAGAAATGGTAGTACAAAACCCAACAAACTCATGTTCAAAACCATCTTCAAATTCACCATCTTTAGTAGAAAGAAGATCAAGACCTCAAAAAGAATCCGCCATAAATTGCCCAAGATGCAATTCCACAAACACCAAATTCTGTTACTACAACAATTACAGCCTCTCGCAACCTCGATACTTTTGCAAAACTTGTCGAAGGTATTGGACCGAAGGTGGGTCGCTTAGAAACGTTCCGGTCGGCGGTGGGCACGGAAG...

CDS

Download CDS FASTA

378 bp · TkA06G016900|TK1151|CDS

ATGGAAGAAATGGTAGTACAAAACCCAACAAACTCATGTTCAAAACCATCTTCAAATTCACCATCTTTAGTAGAAAGAAGATCAAGACCTCAAAAAGAATCCGCCATAAATTGCCCAAGATGCAATTCCACAAACACCAAATTCTGTTACTACAACAATTACAGCCTCTCGCAACCTCGATACTTTTGCAAAACTTGTCGAAGGTATTGGACCGAAGGTGGGTCGCTTAGAAACGTTCCGGTCGGCGGTGGGCACGGAAG...

Protein

Download Protein FASTA

125 aa · TkA06G016900|TK1151|PROTEIN

MEEMVVQNPTNSCSKPSSNSPSLVERRSRPQKESAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGHGRTKDHRRRYHLIIILQCRRSFLILLYLPQHLQYFLKTLE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G016900`
TK1151 ID	TkA06G016900
OH-1004 ID	LXL04_030717
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	66.700
Protein coverage (%)	TK1151 64.800 / OH-1004 19.789 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G016900

Location Chr06:4587187-4587564 (+)

Description Similar to DOF5.6: Dof zinc finger protein DOF5.6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64620`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At4g24060`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At3g61850`	Transcription factor specifically involved in the maternal control of seed germination.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0567800`	Transcription factor that may transactivate seed storage protein genes in developing seeds.	No verified direct reference in this release
`Os02g0673700`	Transcription factor that may transactivate seed storage protein genes in developing seeds.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030717 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010067 procambium histogenesis Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048364 root development Biological Process

GO:0090057 root radial pattern formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G45610

ath:AT4G24060

ath:AT5G60200

ath:AT5G62940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.628

Rank 1 · TkA06G016900 · TK1151

Cytoplasm0.307

Rank 2 · TkA06G016900 · TK1151

Mitochondrion0.075

Rank 3 · TkA06G016900 · TK1151

Cell membrane0.056

Rank 4 · TkA06G016900 · TK1151

Endoplasmic reticulum0.046

Rank 5 · TkA06G016900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12773DZR13-15 aa

PF23451Zn_ribbon_PaaD28-67 aa

PF14369Zn_ribbon_1929-43 aa

PF12251SNAPC331-68 aa

PF12773DZR31-66 aa

PF02701Zn_ribbon_Dof35-89 aa

PF27208TP_021438-68 aa

PF14369Zn_ribbon_1948-50 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G016900	`PF12773`	DZR	13	15	3.3	8.7
TkA06G016900	`PF23451`	Zn_ribbon_PaaD	28	67	0.00014	22.2
TkA06G016900	`PF14369`	Zn_ribbon_19	29	43	4.2	8.3
TkA06G016900	`PF12251`	SNAPC3	31	68	0.11	12.9
TkA06G016900	`PF12773`	DZR	31	66	3.3	8.7
TkA06G016900	`PF02701`	Zn_ribbon_Dof	35	89	4.8e-33	113.8
TkA06G016900	`PF27208`	TP_0214	38	68	0.0064	16.9
TkA06G016900	`PF14369`	Zn_ribbon_19	48	50	4.2	8.3
TkA06G016900	`PF14369`	Zn_ribbon_19	60	71	4.2	8.3
TkA06G016900	`PF14369`	Zn_ribbon_19	102	106	4.2	8.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q84JQ8`	Arabidopsis thaliana	sp\|Q84JQ8\|DOF18_ARATH Dof zinc finger protein DOF1.8	71.100%	Swiss-Prot	Medium
`Q8LAP8`	Arabidopsis thaliana	sp\|Q8LAP8\|DOF46_ARATH Dof zinc finger protein DOF4.6	67.000%	Swiss-Prot	Medium
`Q43385`	Arabidopsis thaliana	sp\|Q43385\|DOF37_ARATH Dof zinc finger protein DOF3.7	71.800%	Swiss-Prot	Medium
`Q9SXG8`	Oryza sativa subsp. japonica	sp\|Q9SXG8\|DOF1_ORYSJ Dof zinc finger protein 1	86.400%	Swiss-Prot	Medium
`B9F1L8`	Oryza sativa subsp. japonica	sp\|B9F1L8\|DOF2_ORYSJ Dof zinc finger protein 2	93.300%	Swiss-Prot	Low

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