TkA06G012420 | RubberDandelionOmics

Gene overview

TkA06G012420

Reference: TK1151 Chr: Chr06 Coordinates: 3230924-3233153 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1617 bp · TkA06G012420|TK1151|cDNA

CGGTATACAACGTTCGAGAATCGAGACTACCAACCAAAATCCAAAATCAGAATTGAAACTTTGAAAGCTTCCTGGTCGTGAGTCGTGACCTAGCAAACGACGCCTCCCCGAGTCCCGATTCAACTCCCGGCGCACACACACGGCCAACTCCCGGCGCACACAGACGGCCAACTCCCGACGGTCAACTAATATATCTCTTCCATTTTCTATTTAGGCGCCACTTTGCACCAAAGAGGCAAAGATAGAATTACACCTTTGCC...

CDS

Download CDS FASTA

1059 bp · TkA06G012420|TK1151|CDS

ATGAAAAGAATGATAGCATTGGGATTCGAAGGATCAGCCAACAAGATCGGTGTAGGAGTAGTAACTCTAGATGGCACAATCTTATCAAACCCAAGACACACCTACATCACCCCACCAGGTCAAGGCTTCCTCCCTCGTGAAACCGCCCACCACCACCTCCAACACATCCTCCCTTTAGTCAAACAAGCCCTCGAAACAGCCCAAATCACATTAAAAGACATCAACTGTCTATGTTACACAAAAGGTCCAGGAATGGGTGC...

Protein

Download Protein FASTA

352 aa · TkA06G012420|TK1151|PROTEIN

MKRMIALGFEGSANKIGVGVVTLDGTILSNPRHTYITPPGQGFLPRETAHHHLQHILPLVKQALETAQITLKDINCLCYTKGPGMGAPLQVSAIVVRVLSQLWKIPIVGVNHCVAHIEMGRIVTGAVDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAIGNCLDRFARVLMLSNDPSPGYNIEQLAKKGEKFIDLPYVVKGMDVSFSGILSYIESTAEEKLKSNDCTPADLCYSLQETLFAMLVEITERAMAHCDKKDV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G012420`
TK1151 ID	TkA06G012420
OH-1004 ID	LXL04_026421
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G012420`
Location	Chr06:3230924-3233153 (+)
Description	Similar to osgep: Probable tRNA N6-adenosine threonylcarbamoyltransferase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026421` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0002949 tRNA threonylcarbamoyladenosine modification Biological Process GO:0006400 tRNA modification Biological Process GO:0000408 EKC/KEOPS complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0046872 metal ion binding Molecular Function GO:0061711 tRNA N(6)-L-threonylcarbamoyladenine synthase activity Molecular Function
KEGG gene cross-reference	bta:507512 mmu:66246 nve:5502327 rno:290028 xla:380480 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.712

Rank 1 · TkA06G012420 · TK1151

Nucleus0.387

Rank 2 · TkA06G012420 · TK1151

Mitochondrion0.084

Rank 3 · TkA06G012420 · TK1151

Cell membrane0.053

Rank 4 · TkA06G012420 · TK1151

Endoplasmic reticulum0.039

Rank 5 · TkA06G012420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00814TsaD32-304 aa

PF22521HypF_C_2179-299 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G012420	`PF00814`	TsaD	32	304	6e-83	279.3
TkA06G012420	`PF22521`	HypF_C_2	179	299	5.1e-06	27.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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