RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G010510
Reference: TK1151 Chr: Chr06 Coordinates: 2703787-2715239 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

8300 bp · TkA06G010510|TK1151|cDNA

GGAAAAAAAGCTCAGAGTAGGAAGCCAATGGCGAACTTGTATAGTCTAGTTCACGAACTTCGTGAACGAATCGCAGCATCGTCCTCAACACCTCCCAACAAATCAGATGATACCTCTTTAGAGCTCCGATTTCGCGCCGTCATCCCGAATCTCCTCCAAGCCTACGTCGTCCCGCATTCCTCCGCTAACGAGAGGGAGGTGATTGCTGTACTGAAATTATTGACTCATACAGTCAATAATTTTCCAGGAGTTTTCTTCCA...

CDS

Download CDS FASTA

8061 bp · TkA06G010510|TK1151|CDS

ATGGCGAACTTGTATAGTCTAGTTCACGAACTTCGTGAACGAATCGCAGCATCGTCCTCAACACCTCCCAACAAATCAGATGATACCTCTTTAGAGCTCCGATTTCGCGCCGTCATCCCGAATCTCCTCCAAGCCTACGTCGTCCCGCATTCCTCCGCTAACGAGAGGGAGGTGATTGCTGTACTGAAATTATTGACTCATACAGTCAATAATTTTCCAGGAGTTTTCTTCCATGGAAAGGCCAGTGCTATTTTACCTGT...

Protein

Download Protein FASTA

2686 aa · TkA06G010510|TK1151|PROTEIN

MANLYSLVHELRERIAASSSTPPNKSDDTSLELRFRAVIPNLLQAYVVPHSSANEREVIAVLKLLTHTVNNFPGVFFHGKASAILPVICRILPFFAEPSFCSRHGVIFETLGSLLSLLRTGDRDAYRQFFEDVMGVVKDLKTIASTVNNTSKQEQEVFLRCFHDSLSGISNDSAFLVELPACNKPTNGFGILINLTGIARWQPFATWIIKVSCKCLTEGALNVEGLVNVPFVLAACKLLCYGDAALQMACFDLVRILGAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G010510
TK1151 IDTkA06G010510
OH-1004 IDLXL04_026443
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G010510
LocationChr06:2703787-2715239 (+)
DescriptionSimilar to ATR: Serine/threonine-protein kinase ATR
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g40820 Probable serine/threonine kinase.
ATR regulates a G2-phase cell-cycle checkpoint in Arabidopsis thaliana.2004 · DOI: 10.1105/tpc.018903
Ionizing radiation-dependent gamma-H2AX focus formation requires ataxia telangiectasia mutated and ataxia telangiectasia mutated and Rad3-related.2005 · DOI: 10.1091/mbc.e04-10-0890

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0724700 Probable serine/threonine kinase. No verified direct reference in this release
UniProt: A2YH41 Probable serine/threonine kinase. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026443 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000077 DNA damage checkpoint signaling Biological Process
GO:0000723 telomere maintenance Biological Process
GO:0006139 nucleobase-containing compound metabolic process Biological Process
GO:0006260 DNA replication Biological Process
GO:0006281 DNA repair Biological Process
GO:0006282 regulation of DNA repair Biological Process
GO:0006302 double-strand break repair Biological Process
GO:0006303 double-strand break repair via nonhomologous end joining Biological Process
GO:0006952 defense response Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007004 telomere maintenance via telomerase Biological Process
GO:0008156 negative regulation of DNA replication Biological Process
KEGG gene cross-reference
ath:AT5G40820
hsa:545
xla:398197
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.653
Rank 1 · TkA06G010510 · TK1151
Cytoplasm0.282
Rank 2 · TkA06G010510 · TK1151
Cell membrane0.069
Rank 3 · TkA06G010510 · TK1151
Golgi apparatus0.066
Rank 4 · TkA06G010510 · TK1151
Endoplasmic reticulum0.054
Rank 5 · TkA06G010510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27497TP_0747_N311-342 aa
PF25030M-HEAT_ATR377-412 aa
PF27497TP_0747_N601-673 aa
PF02985HEAT616-636 aa
PF26235zf-KKT2_KKT3712-749 aa
PF02985HEAT752-773 aa
PF08064UME788-823 aa
PF02985HEAT881-901 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G010510PF27497TP_0747_N3113420.04914.1
TkA06G010510PF25030M-HEAT_ATR3774127.2e-35121.2
TkA06G010510PF27497TP_0747_N6016730.04914.1
TkA06G010510PF02985HEAT6166360.8610.8
TkA06G010510PF26235zf-KKT2_KKT37127490.06414.1
TkA06G010510PF02985HEAT7527730.8610.8
TkA06G010510PF08064UME7888232e-1660.4
TkA06G010510PF02985HEAT8819010.8610.8
TkA06G010510PF08064UME108611862e-1660.4
TkA06G010510PF11865mTOR_dom111211890.06513.9
TkA06G010510PF23593HEAT_ATR116612015.5e-31107.1
TkA06G010510PF00454PI3_PI4_kinase119712721.7e-56192.6
TkA06G010510PF02260FATC123412421.7e-1350.7
TkA06G010510PF02985HEAT125412710.8610.8
TkA06G010510PF11865mTOR_dom132413490.06513.9
TkA06G010510PF02985HEAT137613940.8610.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FKS4Arabidopsis thalianasp|Q9FKS4|ATR_ARATH Serine/threonine-protein kinase ATR60.400%Swiss-ProtHigh
Q5Z987Oryza sativa subsp. japonicasp|Q5Z987|ATR_ORYSJ Serine/threonine-protein kinase ATR57.800%Swiss-ProtHigh
A2YH41Oryza sativa subsp. indicasp|A2YH41|ATR_ORYSI Serine/threonine-protein kinase ATR57.800%Swiss-ProtHigh

JBrowse

View in Genome Browser