TkA06G003680 | RubberDandelionOmics

Gene overview

TkA06G003680

Reference: TK1151 Chr: Chr06 Coordinates: 867502-871611 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

861 bp · TkA06G003680|TK1151|cDNA

ATGCTTCGATCTCTGTGCGTTACAATAATGGAAGCTCAGTACCTCCAAATTGCCTCAAATCTTCCTCCATTAACAGCGCCAGAAGTTCGAGTAAAAGTCCAGCTAGGGTTTCAATCGTGCGAACAAAGAGAGTTAGAGTGTTTCTCTCTTTCTCCCTCAAATTGGTTGTTAATTTTGATGTACACGTGGTGGTACAGAAAACGCAGAGATCAGAGGAAGAGTCCCGTTTCGTTACCTGTGACTGTGCTTGATCTAGACGA...

CDS

Download CDS FASTA

861 bp · TkA06G003680|TK1151|CDS

ATGCTTCGATCTCTGTGCGTTACAATAATGGAAGCTCAGTACCTCCAAATTGCCTCAAATCTTCCTCCATTAACAGCGCCAGAAGTTCGAGTAAAAGTCCAGCTAGGGTTTCAATCGTGCGAACAAAGAGAGTTAGAGTGTTTCTCTCTTTCTCCCTCAAATTGGTTGTTAATTTTGATGTACACGTGGTGGTACAGAAAACGCAGAGATCAGAGGAAGAGTCCCGTTTCGTTACCTGTGACTGTGCTTGATCTAGACGA...

Protein

Download Protein FASTA

286 aa · TkA06G003680|TK1151|PROTEIN

MLRSLCVTIMEAQYLQIASNLPPLTAPEVRVKVQLGFQSCEQRELECFSLSPSNWLLILMYTWWYRKRRDQRKSPVSLPVTVLDLDDDEGCKEEIVEEKKEQKIDVDNNSKKDGKSMKKEHALTDFVKHSLVHVRGLKLERMEQQLELGRIYAGASVESGAPEILDLTLFFVCGSSLWKPLSLLHGASSVYLSWCFYLSASRSKEGIQISVHYRAVLDLIKPRNPTEPYNHVDQETSSSTVTIVAVLQTLIGLDHQSSQD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G003680`
TK1151 ID	TkA06G003680
OH-1004 ID	LXL04_026580
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G003680

Location Chr06:867502-871611 (-)

Description Similar to QKY: Protein QUIRKY

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g74720`	May be involved in Ca 2(+)-dependent signaling and membrane trafficking.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026580 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009911 positive regulation of flower development Biological Process

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:0048467 gynoecium development Biological Process

GO:0048729 tissue morphogenesis Biological Process

GO:0051211 anisotropic cell growth Biological Process

GO:0099402 plant organ development Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G74720

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.410

Rank 1 · TkA06G003680 · TK1151

Cytoplasm0.403

Rank 2 · TkA06G003680 · TK1151

Mitochondrion0.153

Rank 3 · TkA06G003680 · TK1151

Cell membrane0.099

Rank 4 · TkA06G003680 · TK1151

Endoplasmic reticulum0.083

Rank 5 · TkA06G003680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`B8XCH5`	Arabidopsis thaliana	sp\|B8XCH5\|QKY_ARATH Protein QUIRKY	73.000%	Swiss-Prot	Low

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