TkA06G001710 | RubberDandelionOmics

Gene overview

TkA06G001710

Reference: TK1151 Chr: Chr06 Coordinates: 416993-418459 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1467 bp · TkA06G001710|TK1151|cDNA

ATGGCTTCATCCGTTTTCTCCAGCTTCCGTTATGTTTTCTTTCTATTCTTTTCCGTAGCATCTTCCAAGTTGCTTCTCTTTCCGCTCACCAACTCTCTCTCCAGTTATTCCCATTTCAATTCTACCCATCACCTCCTCAAATCCACCACCGCCCGATCCACCGCGCGTTTCCTCCGCCACCACAGCCGTCAAGTCTCCGTGGCGCTCTCCCCTGGGAGTGATTACACCATGTCTTTCTCACTCGGCTCTGCTCCTAAGCG...

CDS

Download CDS FASTA

1467 bp · TkA06G001710|TK1151|CDS

ATGGCTTCATCCGTTTTCTCCAGCTTCCGTTATGTTTTCTTTCTATTCTTTTCCGTAGCATCTTCCAAGTTGCTTCTCTTTCCGCTCACCAACTCTCTCTCCAGTTATTCCCATTTCAATTCTACCCATCACCTCCTCAAATCCACCACCGCCCGATCCACCGCGCGTTTCCTCCGCCACCACAGCCGTCAAGTCTCCGTGGCGCTCTCCCCTGGGAGTGATTACACCATGTCTTTCTCACTCGGCTCTGCTCCTAAGCG...

Protein

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488 aa · TkA06G001710|TK1151|PROTEIN

MASSVFSSFRYVFFLFFSVASSKLLLFPLTNSLSSYSHFNSTHHLLKSTTARSTARFLRHHSRQVSVALSPGSDYTMSFSLGSAPKRTVTLYMDTGSDTVWLPCKPFTCIMCEGKSDPQSTPSPYNLSTSAAPVTCQSRACSAVHSGLPTSDICATAHCPLESIEMSECENYSCPDFYYAYGDGSFVARLYTDNLEISMSAPPSLVIRNFTFGCAHESLGEPIGVAGFGRGALSLPAQLAEFSPHLGTQFSYCLVSHSFD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G001710`
TK1151 ID	TkA06G001710
OH-1004 ID	LXL04_026599
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G001710

Location Chr06:416993-418459 (+)

Description Similar to At4g16563: Probable aspartyl protease At4g16563

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g16563`	Probable aspartyl protease At4g16563.	No verified direct reference in this release
`At1g01300`	Aspartyl protease.	No verified direct reference in this release
`At3g18490`	Aspartic protease involved in drought avoidance through abscisic acid signaling.	Overexpression of the aspartic protease ASPG1 gene confers drought avoidance in Arabidopsis.2012 · DOI: 10.1093/jxb/err433
`At3g20015`	Aspartic protease that may be involved in drought avoidance through abscisic acid signaling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026599 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009627 systemic acquired resistance Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

GO:0070001 aspartic-type peptidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G01300

ath:AT3G18490

ath:AT4G16563

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.436

Rank 1 · TkA06G001710 · TK1151

Cell membrane0.223

Rank 2 · TkA06G001710 · TK1151

Endoplasmic reticulum0.125

Rank 3 · TkA06G001710 · TK1151

Cytoplasm0.081

Rank 4 · TkA06G001710 · TK1151

Lysosome / Vacuole0.069

Rank 5 · TkA06G001710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543TAXi_N75-273 aa

PF00026Asp75-477 aa

PF14541TAXi_C310-477 aa

PF14543TAXi_N421-453 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G001710	`PF14543`	TAXi_N	75	273	2.9e-29	103.2
TkA06G001710	`PF00026`	Asp	75	477	9.2e-10	39.2
TkA06G001710	`PF14541`	TAXi_C	310	477	8.7e-26	91.4
TkA06G001710	`PF14543`	TAXi_N	421	453	2.9e-29	103.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q940R4`	Arabidopsis thaliana	sp\|Q940R4\|ASP63_ARATH Probable aspartyl protease At4g16563	54.100%	Swiss-Prot	High
`Q9LNJ3`	Arabidopsis thaliana	sp\|Q9LNJ3\|APF2_ARATH Aspartyl protease family protein 2	31.500%	Swiss-Prot	Medium
`Q9LS40`	Arabidopsis thaliana	sp\|Q9LS40\|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1	29.700%	Swiss-Prot	Low
`Q9LHE3`	Arabidopsis thaliana	sp\|Q9LHE3\|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2	29.400%	Swiss-Prot	Low

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