TkA05G454400 | RubberDandelionOmics

Gene overview

TkA05G454400

Reference: TK1151 Chr: Chr05 Coordinates: 113786413-113789221 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

833 bp · TkA05G454400|TK1151|cDNA

CAATGATGTTAAAAACTCTGGCAGAAAAGTGCTATTCTTCATCTTTTAATAAAAAGGAATATACATGTTAGGTAATAATGATTGACGGAAACAAAATAAACTATATGGGCGTTGGTGGTGTGTGGTCCAACCTCTTGTTTGGTCAACCACAATAGAACTCTAGTTCTCCTCGTGTGTGGGAAAGAAACCAGTGCTTCCCGTTTATTATGGCCGGGAAAAGCTCCAGCAACACCGCCGGCAAGCCCATCCACTGCAGAGCT...

CDS

Download CDS FASTA

1164 bp · TkA05G454400|TK1151|CDS

ATGGCCGGGAAAAGCTCCAGCAACACCGCCGGCAAGCCCATCCACTGCAGAGCTGCGATTGCTAGAAAAGCAGGGGAACCGCTGGTGATAGAGGAGGTGATAGTGGCCCCACCAAAACCTCATGAAGTCAGAATCAAAATTACATGCACTTCTCTTTGTCACACTGATGTTACCTTTTGGAAACTTGAGCATCCTCCTGGTATTTTCCCCATAATATTTGGTCATGAAGCAGTAGGGATCGTGGAGAGTGTGGGAGAAGG...

Protein

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387 aa · TkA05G454400|TK1151|PROTEIN

MAGKSSSNTAGKPIHCRAAIARKAGEPLVIEEVIVAPPKPHEVRIKITCTSLCHTDVTFWKLEHPPGIFPIIFGHEAVGIVESVGEGVHEVVEGDTVIPIFLPDCGECTDCLSDKSNICSKFPLRPSFGMQRDDTSRFTDINGETLNHFLFVSSFSEYTVVDIAHVTKINPTIPPNRACLLGCGISTGVGAAWKTAKVEVGSTVAIFGLGAIGLAVAEGARLCGAKRIIGVDVNQDKCEIGKKFGVTDFVNSRNIGDKTV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G454400`
TK1151 ID	TkA05G454400
OH-1004 ID	LXL04_022266
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G454400

Location Chr05:113786413-113789221 (+)

Description Similar to At5g42250: Alcohol dehydrogenase-like 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42250`	Alcohol dehydrogenase-like 7.	No verified direct reference in this release
`At1g22430`	Alcohol dehydrogenase-like 1.	No verified direct reference in this release
`At1g22440`	Alcohol dehydrogenase-like 2.	No verified direct reference in this release
`At4g22110`	Alcohol dehydrogenase-like 5.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XAZ3`	Alcohol dehydrogenase class-3.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022266 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0046294 formaldehyde catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004022 alcohol dehydrogenase (NAD+) activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity Molecular Function

GO:0106321 S-(hydroxymethyl)glutathione dehydrogenase (NADP+) activity Molecular Function

GO:0106322 S-(hydroxymethyl)glutathione dehydrogenase (NAD+) activity Molecular Function

KEGG gene cross-reference

ath:AT1G22430

ath:AT1G22440

ath:AT4G22110

ath:AT5G42250

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.592

Rank 1 · TkA05G454400 · TK1151

Nucleus0.194

Rank 2 · TkA05G454400 · TK1151

Cell membrane0.104

Rank 3 · TkA05G454400 · TK1151

Peroxisome0.081

Rank 4 · TkA05G454400 · TK1151

Mitochondrion0.080

Rank 5 · TkA05G454400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08240ADH_N39-169 aa

PF05264CfAFP108-198 aa

PF08240ADH_N196-206 aa

PF028262-Hacid_dh_C201-242 aa

PF16912Glu_dehyd_C202-371 aa

PF02254TrkA_N204-250 aa

PF00107ADH_zinc_N211-336 aa

PF08240ADH_N250-275 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G454400	`PF08240`	ADH_N	39	169	6.2e-21	75.3
TkA05G454400	`PF05264`	CfAFP	108	198	0.23	12.2
TkA05G454400	`PF08240`	ADH_N	196	206	6.2e-21	75.3
TkA05G454400	`PF02826`	2-Hacid_dh_C	201	242	0.0025	17.9
TkA05G454400	`PF16912`	Glu_dehyd_C	202	371	0.0015	18.7
TkA05G454400	`PF02254`	TrkA_N	204	250	0.051	14.6
TkA05G454400	`PF00107`	ADH_zinc_N	211	336	4.2e-26	92.1
TkA05G454400	`PF08240`	ADH_N	250	275	6.2e-21	75.3
TkA05G454400	`PF13602`	ADH_zinc_N_2	261	376	0.14	13.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FH04`	Arabidopsis thaliana	sp\|Q9FH04\|ADHL7_ARATH Alcohol dehydrogenase-like 7	68.900%	Swiss-Prot	High
`Q9SK86`	Arabidopsis thaliana	sp\|Q9SK86\|ADHL1_ARATH Alcohol dehydrogenase-like 1	61.000%	Swiss-Prot	High
`Q9SK87`	Arabidopsis thaliana	sp\|Q9SK87\|ADHL2_ARATH Alcohol dehydrogenase-like 2	60.400%	Swiss-Prot	High
`Q0V7W6`	Arabidopsis thaliana	sp\|Q0V7W6\|ADHL5_ARATH Alcohol dehydrogenase-like 5	61.100%	Swiss-Prot	High
`A2XAZ3`	Oryza sativa subsp. indica	sp\|A2XAZ3\|ADHX_ORYSI Alcohol dehydrogenase class-3	51.300%	Swiss-Prot	High

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