TkA05G453150 | RubberDandelionOmics

Gene overview

TkA05G453150

Reference: TK1151 Chr: Chr05 Coordinates: 113425701-113427163 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1384 bp · TkA05G453150|TK1151|cDNA

GTCCGAGTTTGCTAATAAGAAGACACGTGGCACGTTTATTGCGGCGGTGTTTTCGATGCAAGGGTTTGGGATATTGTTGAGTTCGCTTGTTACTATGATTGTGTGCTATGTTTTTAGGGGTTTTAGTGACGAATTGACAACCGTGTCGGAATTGCCACTGTCGGAATCAATTGCACCGGCGCCGCCAGAAGCGGATTTGGCGTGGCGGATTATTCTCATGATTGGTGCAATTCCGGCGTCTATGACCTATTATTGGCGGA...

CDS

Download CDS FASTA

1158 bp · TkA05G453150|TK1151|CDS

ATGCAAGGGTTTGGGATATTGTTGAGTTCGCTTGTTACTATGATTGTGTGCTATGTTTTTAGGGGTTTTAGTGACGAATTGACAACCGTGTCGGAATTGCCACTGTCGGAATCAATTGCACCGGCGCCGCCAGAAGCGGATTTGGCGTGGCGGATTATTCTCATGATTGGTGCAATTCCGGCGTCTATGACCTATTATTGGCGGATGAAGATGCCGGAAACCGCCAGATTCACAGCTTTGGTGGAGAAAAATGCATTACA...

Protein

Download Protein FASTA

385 aa · TkA05G453150|TK1151|PROTEIN

MQGFGILLSSLVTMIVCYVFRGFSDELTTVSELPLSESIAPAPPEADLAWRIILMIGAIPASMTYYWRMKMPETARFTALVEKNALQAAEDMEKVMNISPSQIREDIETVNTPNTRAALSNTYPFFSQEFLRRHGRDLISAAVNWFLVDIVFYSLNLFQYHAFKRKMTPKSHIDIYDDALQIAKFQALVAVCATIPGYFLAIYMIDYVGRVKIQATGFFFMAVSLFTIAYVNRGNWGSDQSVGFMILYGLTFFFSNFGPN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G453150`
TK1151 ID	TkA05G453150
OH-1004 ID	LXL04_022244
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 27.500 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G453150

Location Chr05:113425701-113427163 (+)

Description Similar to PHT1-9: Probable inorganic phosphate transporter 1-9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76430`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release
`At1g20860`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0324800`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release
`Os06g0325200`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022244 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006817 phosphate ion transport Biological Process

GO:0009451 RNA modification Biological Process

GO:1901684 arsenate ion transmembrane transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0005315 phosphate transmembrane transporter activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0015293 symporter activity Molecular Function

GO:0015415 ATPase-coupled phosphate ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G20860

ath:AT1G76430

ath:AT4G13650

dosa:Os06g0324800

dosa:Os06g0325200

osa:4340904

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.373

Rank 1 · TkA05G453150 · TK1151

Lysosome / Vacuole0.247

Rank 2 · TkA05G453150 · TK1151

Cytoplasm0.166

Rank 3 · TkA05G453150 · TK1151

Endoplasmic reticulum0.148

Rank 4 · TkA05G453150 · TK1151

Golgi apparatus0.111

Rank 5 · TkA05G453150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083Sugar_tr47-345 aa

PF07553Lipoprotein_Ltp82-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G453150	`PF00083`	Sugar_tr	47	345	1.3e-27	97.6
TkA05G453150	`PF07553`	Lipoprotein_Ltp	82	105	0.098	13.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9S735`	Arabidopsis thaliana	sp\|Q9S735\|PHT19_ARATH Probable inorganic phosphate transporter 1-9	54.200%	Swiss-Prot	High
`Q9SYQ1`	Arabidopsis thaliana	sp\|Q9SYQ1\|PHT18_ARATH Probable inorganic phosphate transporter 1-8	51.400%	Swiss-Prot	High
`Q8H6G7`	Oryza sativa subsp. japonica	sp\|Q8H6G7\|PHT19_ORYSJ Probable inorganic phosphate transporter 1-9	43.800%	Swiss-Prot	Medium
`Q69T94`	Oryza sativa subsp. japonica	sp\|Q69T94\|PT110_ORYSJ Probable inorganic phosphate transporter 1-10	47.900%	Swiss-Prot	Medium

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