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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G449810
Reference: TK1151 Chr: Chr05 Coordinates: 112457202-112466083 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2096 bp · TkA05G449810|TK1151|cDNA

TTAAAATCTTCTTTTTCTCAAATACATTAGTCATTCTAAATCTTTTATATGGAGAGAAAAAAAAATACAATTTGGCCCGACCCGTACAACATATGGGTCTAATCTTATCCATACACTCGGATAGTGAATGAAATCCGAAATCTTCATATTCTTCCACACATATTTGAGATTCCCTCTCTCTCTCTTTCTCTCTTTCTCTCTCTCTACATTCTACGAACAATGAAGCTCGACTGAATTTCAATCTCTCGGACCAAAACAAG...

CDS

Download CDS FASTA

1746 bp · TkA05G449810|TK1151|CDS

ATGATTTCTGCAGAATTTTCATCAAAATTCTTCCCCTTCAATTCTCACCACCCAAAACAAGCAACAAATTCTCATCACCATCATTACTCTGTTATAACCTGTAGAAATCCAAATCCAAATCCAAATCCAAACCCTAGCCCCTACTACAGCAATAGCAGAAGCAAAAGCTATTCAAATGTCAAACTTACCACCACGTCAAAGCCCGACCATTTGCAATCGTACACTTACAAAGAGACGCATTTCATGAAACTGCTCAACAG...

Protein

Download Protein FASTA

581 aa · TkA05G449810|TK1151|PROTEIN

MISAEFSSKFFPFNSHHPKQATNSHHHHYSVITCRNPNPNPNPNPSPYYSNSRSKSYSNVKLTTTSKPDHLQSYTYKETHFMKLLNRSCKAGKYDESLYFLELMVGKGYKPDVILCTKLIKGFFNTKRVEKAVKVIQILESHGEPDVFAYNAVISGFCKLNQIDSANRVLDRMRNQGFSPDVVTYNILIGSLCSRGKLRCAMKMLEKLLEDNCKPTVITYTILIEATIFDGGITEAMKLLDEMLSRELQPDMYTYNAIIR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G449810
TK1151 IDTkA05G449810
OH-1004 IDLXL04_023361
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)30.200
Protein coverage (%)TK1151 14.802 / OH-1004 15.750
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G449810
LocationChr05:112457202-112466083 (-)
DescriptionSimilar to At1g62910: Pentatricopeptide repeat-containing protein At1g62910
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g04760 Pentatricopeptide repeat-containing protein At3g04760, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023361 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0090617 mitochondrial mRNA 5'-end processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G62910
ath:AT1G63080
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.453
Rank 1 · TkA05G449810 · TK1151
Mitochondrion0.432
Rank 2 · TkA05G449810 · TK1151
Nucleus0.052
Rank 3 · TkA05G449810 · TK1151
Cytoplasm0.026
Rank 4 · TkA05G449810 · TK1151
Cell membrane0.013
Rank 5 · TkA05G449810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19189Mtf217-48 aa
PF11695DUF329159-87 aa
PF23276TPR_2472-166 aa
PF29070MSC6_N78-171 aa
PF13041PPR_283-113 aa
PF12000Glyco_trans_4_383-115 aa
PF00637Clathrin83-137 aa
PF12854PPR_184-105 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G449810PF19189Mtf217480.01515.7
TkA05G449810PF11695DUF329159870.006716.6
TkA05G449810PF23276TPR_24721661.1e-44152.2
TkA05G449810PF29070MSC6_N781712.2e-2590.3
TkA05G449810PF13041PPR_2831135.2e-145472.2
TkA05G449810PF12000Glyco_trans_4_3831150.0613.8
TkA05G449810PF00637Clathrin831370.1912.2
TkA05G449810PF12854PPR_1841052.7e-127414.8
TkA05G449810PF01535PPR841081.1e-82267.4
TkA05G449810PF13374TPR_10891020.0002221.8
TkA05G449810PF10037MRP-S27901384.2e-1039.9
TkA05G449810PF13424TPR_12901010.02415.5
TkA05G449810PF07719TPR_2901020.05714.3
TkA05G449810PF28737VPS18_solenoid_2nd921261.8e-0525.4
TkA05G449810PF17177PPR_long952231.7e-33116.5
TkA05G449810PF13812PPR_31021579.8e-70231.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SR00Arabidopsis thalianasp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic41.800%Swiss-ProtLow

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