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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G447270
Reference: TK1151 Chr: Chr05 Coordinates: 111840738-111843137 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1519 bp · TkA05G447270|TK1151|cDNA

AAAACCCCCAAAACATATGAAATCCTTAAATCCTAATGCCTAATGGCATCATCCATGGTGCCCGCTCTATCTTCATCCCTCTGCACAACTCCTCAGAAGCCATCAATAATATTCATCCCTTTCTTACCCTCATTTCAGAAGTCCATTTCCCTCCAATTTAACTTCAAATTCCGAAAACCCATATTCAAATTCAATCAGAAGAACACCGTCACCCTAACGGCAATCACCTGTTTGAAATCACGAAGTACATATGAAGCACC...

CDS

Download CDS FASTA

1176 bp · TkA05G447270|TK1151|CDS

ATGGCATCATCCATGGTGCCCGCTCTATCTTCATCCCTCTGCACAACTCCTCAGAAGCCATCAATAATATTCATCCCTTTCTTACCCTCATTTCAGAAGTCCATTTCCCTCCAATTTAACTTCAAATTCCGAAAACCCATATTCAAATTCAATCAGAAGAACACCGTCACCCTAACGGCAATCACCTGTTTGAAATCACGAAGTACATATGAAGCACCAGCAACGAATTCAAGTTACGCTGTCACTGCTCCATCATTGTC...

Protein

Download Protein FASTA

391 aa · TkA05G447270|TK1151|PROTEIN

MASSMVPALSSSLCTTPQKPSIIFIPFLPSFQKSISLQFNFKFRKPIFKFNQKNTVTLTAITCLKSRSTYEAPATNSSYAVTAPSLSESNGHRNWIVVVKAPPPQHAVSKPDIIDYYVKILERVLGSEKEAQGCIYNASYDTHFGFCCDIDEETSQKLAGLPEVLSINPDPDFNSIQKDYTNEKTESLSSNKLKNWLVRVEMPPLAVITRAQLVDYYTQILTKVLGNEKDAQKCIYHISSQSNYGFCCEVNDEHANELSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G447270
TK1151 IDTkA05G447270
OH-1004 IDLXL04_022138
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G447270
LocationChr05:111840738-111843137 (-)
DescriptionSimilar to ORRM1: Organelle RRM domain-containing protein 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g20930 Involved in C-to-U editing of chloroplastic RNA.
An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize.2013 · DOI: 10.1073/pnas.1220162110
At1g73530 Involved in C-to-U editing of chloroplastic RNA.
An Organelle RNA Recognition Motif Protein Is Required for Photosystem II Subunit psbF Transcript Editing.2017 · DOI: 10.1104/pp.16.01623
At1g32580 Involved in organellar RNA editing. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0730800 Involved in C-to-U editing of chloroplastic RNA. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022138 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009409 response to cold Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:1900871 chloroplast mRNA modification Biological Process
GO:1901002 positive regulation of response to salt stress Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G73530
ath:AT3G20930
ath:AT5G06210
dosa:Os02g0730800
osa:4330618
zma:100304402
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.947
Rank 1 · TkA05G447270 · TK1151
Mitochondrion0.064
Rank 2 · TkA05G447270 · TK1151
Cytoplasm0.045
Rank 3 · TkA05G447270 · TK1151
Nucleus0.035
Rank 4 · TkA05G447270 · TK1151
Peroxisome0.023
Rank 5 · TkA05G447270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21864MORF_dom93-184 aa
PF05922Inhibitor_I9109-170 aa
PF23045DUF7037142-154 aa
PF21864MORF_dom194-282 aa
PF05922Inhibitor_I9217-272 aa
PF00076RRM_1227-237 aa
PF23045DUF7037244-254 aa
PF16367RRM_7300-361 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G447270PF21864MORF_dom931844.5e-70232.3
TkA05G447270PF05922Inhibitor_I91091703e-0731.7
TkA05G447270PF23045DUF70371421540.001319.4
TkA05G447270PF21864MORF_dom1942824.5e-70232.3
TkA05G447270PF05922Inhibitor_I92172723e-0731.7
TkA05G447270PF00076RRM_12272375.9e-2071.6
TkA05G447270PF23045DUF70372442540.001319.4
TkA05G447270PF16367RRM_73003610.03314.9
TkA05G447270PF00076RRM_13023685.9e-2071.6
TkA05G447270PF28976RRM_ACIN13133640.1113.4
TkA05G447270PF21864MORF_dom3683794.5e-70232.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L440Arabidopsis thalianasp|Q8L440|ORRM1_ARATH Organelle RRM domain-containing protein 1, chloroplastic56.200%Swiss-ProtHigh
Q9FX45Arabidopsis thalianasp|Q9FX45|ORRM6_ARATH Organelle RRM domain-containing protein 6, chloroplastic50.600%Swiss-ProtLow
Q9C7Y2Arabidopsis thalianasp|Q9C7Y2|MORF5_ARATH Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial47.200%Swiss-ProtLow
Q6YWP9Oryza sativa subsp. japonicasp|Q6YWP9|ORRM1_ORYSJ Organelle RRM domain-containing protein 1, chloroplastic55.400%Swiss-ProtHigh

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