TkA05G444220 | RubberDandelionOmics

Gene overview

TkA05G444220

Reference: TK1151 Chr: Chr05 Coordinates: 111077133-111079472 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1813 bp · TkA05G444220|TK1151|cDNA

CTCTTGTATGCCACGGCCAGTTGTTGAAAACTAGGTCTCTAATTTGTCTTTCGAACTTCGTTAACCTTTCTGCCGGCATGCAGACCCCCCTGTTACATAGACACGGCGAGAAGTCGCTTTTCCTCCACCGGATCTCATGATGGATTCATTCCACCACCACCACCAGATACGGTGCATGTTAGCATTTCTCATCCTTTCACTAGCTAGAACCAGCGCCGTCATCATCGATCTCCGGTGGGATGTTGCAATTGACGACACTC...

CDS

Download CDS FASTA

1677 bp · TkA05G444220|TK1151|CDS

ATGATGGATTCATTCCACCACCACCACCAGATACGGTGCATGTTAGCATTTCTCATCCTTTCACTAGCTAGAACCAGCGCCGTCATCATCGATCTCCGGTGGGATGTTGCAATTGACGACACTCTCAGACCTTCACCGGCGGCTCAGCCGGTTATCACCATTAATGGTAAGTTCCCCGGACCTCTTATCAATGCCACCACCAACGATATTGTCAGAGTCAACGTCTTCAATAATCTAGACGAACCATTGCTTTTCACTTG...

Protein

Download Protein FASTA

559 aa · TkA05G444220|TK1151|PROTEIN

MMDSFHHHHQIRCMLAFLILSLARTSAVIIDLRWDVAIDDTLRPSPAAQPVITINGKFPGPLINATTNDIVRVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCAIKPGTNWTYAFVVKDQIGTFSYFPSINYQKLAGGFGAIRVNNRIVISVPFPKPEAEFDLLIGDWFFNDYKSVRSELGPSIDVPDMTLMNGKPPYGYSKSKPYESFTVTKGKTYRFRVSNVGTTLSFNFRIGKHKMVVVETEGSYTNQTTLDSI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G444220`
TK1151 ID	TkA05G444220
OH-1004 ID	LXL04_012911
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	65.400
Protein coverage (%)	TK1151 82.290 / OH-1004 80.885 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G444220

Location Chr05:111077133-111079472 (-)

Description Similar to SKU5: Monocopper oxidase-like protein SKU5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12420`	May be a monocopper oxidase of unknown specificity.	No verified direct reference in this release
`At4g25240`	Monocopper oxidase-like protein SKS1.	No verified direct reference in this release
`At5g51480`	Monocopper oxidase-like protein SKS2.	No verified direct reference in this release
`At1g55560`	Probable oxidoreductase that may be involved in pollen tube growth.	Two Arabidopsis late pollen transcripts are detected in cytoplasmic granules.2017 · DOI: 10.1002/pld3.12

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012911 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009932 cell tip growth Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0048046 apoplast Cellular Component

GO:0098552 side of membrane Cellular Component

GO:0005507 copper ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

KEGG gene cross-reference

ath:AT4G12420

ath:AT4G25240

ath:AT5G51480

bna:106452325

nta:107766889

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.713

Rank 1 · TkA05G444220 · TK1151

Cytoplasm0.090

Rank 2 · TkA05G444220 · TK1151

Endoplasmic reticulum0.074

Rank 3 · TkA05G444220 · TK1151

Cell membrane0.073

Rank 4 · TkA05G444220 · TK1151

Lysosome / Vacuole0.044

Rank 5 · TkA05G444220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07732Cu-oxidase_346-150 aa

PF07731Cu-oxidase_260-78 aa

PF23571GH3_M67-78 aa

PF00394Cu-oxidase166-308 aa

PF23571GH3_M205-226 aa

PF31255Fn3_PBP1206-226 aa

PF07731Cu-oxidase_2207-276 aa

PF07732Cu-oxidase_3216-230 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G444220	`PF07732`	Cu-oxidase_3	46	150	2.2e-37	128.5
TkA05G444220	`PF07731`	Cu-oxidase_2	60	78	3.5e-31	108.5
TkA05G444220	`PF23571`	GH3_M	67	78	0.15	12.9
TkA05G444220	`PF00394`	Cu-oxidase	166	308	2.1e-40	139.1
TkA05G444220	`PF23571`	GH3_M	205	226	0.15	12.9
TkA05G444220	`PF31255`	Fn3_PBP1	206	226	4.5	8.4
TkA05G444220	`PF07731`	Cu-oxidase_2	207	276	3.5e-31	108.5
TkA05G444220	`PF07732`	Cu-oxidase_3	216	230	2.2e-37	128.5
TkA05G444220	`PF23571`	GH3_M	251	274	0.15	12.9
TkA05G444220	`PF31255`	Fn3_PBP1	251	279	4.5	8.4
TkA05G444220	`PF23571`	GH3_M	371	384	0.15	12.9
TkA05G444220	`PF00394`	Cu-oxidase	389	441	2.1e-40	139.1
TkA05G444220	`PF31255`	Fn3_PBP1	412	429	4.5	8.4
TkA05G444220	`PF07731`	Cu-oxidase_2	422	529	3.5e-31	108.5
TkA05G444220	`PF00394`	Cu-oxidase	479	510	2.1e-40	139.1
TkA05G444220	`PF26519`	BsaP	486	495	0.32	11.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SU40`	Arabidopsis thaliana	sp\|Q9SU40\|SKU5_ARATH Monocopper oxidase-like protein SKU5	50.500%	Swiss-Prot	High
`Q8VXX5`	Arabidopsis thaliana	sp\|Q8VXX5\|SKS1_ARATH Monocopper oxidase-like protein SKS1	48.800%	Swiss-Prot	Medium
`Q9FHN6`	Arabidopsis thaliana	sp\|Q9FHN6\|SKS2_ARATH Monocopper oxidase-like protein SKS2	46.800%	Swiss-Prot	Medium
`Q9SMW3`	Arabidopsis thaliana	sp\|Q9SMW3\|SKS14_ARATH Protein SKU5 SIMILAR 14	42.700%	Swiss-Prot	Medium

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