Gene Card
Gene overview
cDNA / CDS / Protein Sequences
561 bp · TkA05G441600|TK1151|cDNA
ATGGCAGTAAGCAACAACATAATAGCCACCATAAACTTCATAGCACTCATGTGTTCAATCCCAATAATTGTCACCGGCATCTGGCTCGCTTCCAAACCCGACAACCAATGCATCCGCTCCCTCCCGTGGCCGATCATCTTCCTCGGGGTTCTCTTCCTCCTCCTCGCCCTCACAGGCTTCATCGGAGATCACTGGAACAACCAGGTGTTATTGTCCTTTTACCTCTTCTGCAACGCCGCACTCATAGTCACCGGAATCAT...
561 bp · TkA05G441600|TK1151|CDS
ATGGCAGTAAGCAACAACATAATAGCCACCATAAACTTCATAGCACTCATGTGTTCAATCCCAATAATTGTCACCGGCATCTGGCTCGCTTCCAAACCCGACAACCAATGCATCCGCTCCCTCCCGTGGCCGATCATCTTCCTCGGGGTTCTCTTCCTCCTCCTCGCCCTCACAGGCTTCATCGGAGATCACTGGAACAACCAGGTGTTATTGTCCTTTTACCTCTTCTGCAACGCCGCACTCATAGTCACCGGAATCAT...
Protein
Download Protein FASTA186 aa · TkA05G441600|TK1151|PROTEIN
MAVSNNIIATINFIALMCSIPIIVTGIWLASKPDNQCIRSLPWPIIFLGVLFLLLALTGFIGDHWNNQVLLSFYLFCNAALIVTGIILLILAFIVVHPSGEYSVPGREYDEYRYMGYSEWLQEHISDPENWRSIRVCLASSSICTKWFAILILHRPEFFAARISSLQSGCCKPPKVCGYQYVNPIT
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G441600 |
|---|---|
| TK1151 ID | TkA05G441600 |
| OH-1004 ID | LXL04_018612 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 90.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 70.881Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G441600 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:110274264-110274824 (+) | ||||||||||||
| Description | Similar to TET2: Tetraspanin-2 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0009554 megasporogenesis Biological Process GO:0009734 auxin-activated signaling pathway Biological Process GO:0009933 meristem structural organization Biological Process GO:0009934 regulation of meristem structural organization Biological Process GO:0009956 radial pattern formation Biological Process GO:0010015 root morphogenesis Biological Process GO:0010305 leaf vascular tissue pattern formation Biological Process GO:0005576 extracellular region Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009506 plasmodesma Cellular Component GO:0009507 chloroplast Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT2G19580 ath:AT3G45600 ath:AT4G28050 ath:AT4G30430 ath:AT5G46700 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00335Tetraspanin6-181 aaPF18967PycTM7-57 aaPF04103CD2016-152 aaPF01757Acyl_transf_316-95 aaPF11384DUF318817-29 aaPF17555TssN20-91 aaPF20990DUF2207_C46-122 aaPF18967PycTM48-127 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G441600 | PF00335 | Tetraspanin | 6 | 181 | 2.7e-21 | 77.0 |
| TkA05G441600 | PF18967 | PycTM | 7 | 57 | 0.54 | 10.8 |
| TkA05G441600 | PF04103 | CD20 | 16 | 152 | 6.9e-06 | 26.9 |
| TkA05G441600 | PF01757 | Acyl_transf_3 | 16 | 95 | 0.0014 | 18.5 |
| TkA05G441600 | PF11384 | DUF3188 | 17 | 29 | 8.1 | 7.0 |
| TkA05G441600 | PF17555 | TssN | 20 | 91 | 0.065 | 13.4 |
| TkA05G441600 | PF20990 | DUF2207_C | 46 | 122 | 0.072 | 13.5 |
| TkA05G441600 | PF18967 | PycTM | 48 | 127 | 0.54 | 10.8 |
| TkA05G441600 | PF11384 | DUF3188 | 48 | 57 | 8.1 | 7.0 |
| TkA05G441600 | PF11384 | DUF3188 | 81 | 96 | 8.1 | 7.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.