TkA05G439210 | RubberDandelionOmics

Gene overview

TkA05G439210

Reference: TK1151 Chr: Chr05 Coordinates: 109685410-109685887 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

342 bp · TkA05G439210|TK1151|cDNA

GCTTATTTCAACAACAATCAACGAGAATCAACAAAGGAAGCAGCGATCATTGCGGTCGCATTTCAACATACCCAAGAATTTAAGTGGGGAGCTCCAATTGCTGGTCTGCACGACAGAATTTTGGAGGAATCGAAGAAGAGGGGGAGGAGAAATGCTTGTGGGCTGTTGAAGGAGATCGAGGGGATTGAGAGATCTGCTCGATTTGTAAACGAGTTGTGTGGCGGTAAACAGAGCTGTCGCGATGGAGTGGAGGTGGTTGA...

CDS

Download CDS FASTA

342 bp · TkA05G439210|TK1151|CDS

GCTTATTTCAACAACAATCAACGAGAATCAACAAAGGAAGCAGCGATCATTGCGGTCGCATTTCAACATACCCAAGAATTTAAGTGGGGAGCTCCAATTGCTGGTCTGCACGACAGAATTTTGGAGGAATCGAAGAAGAGGGGGAGGAGAAATGCTTGTGGGCTGTTGAAGGAGATCGAGGGGATTGAGAGATCTGCTCGATTTGTAAACGAGTTGTGTGGCGGTAAACAGAGCTGTCGCGATGGAGTGGAGGTGGTTGA...

Protein

Download Protein FASTA

113 aa · TkA05G439210|TK1151|PROTEIN

AYFNNNQRESTKEAAIIAVAFQHTQEFKWGAPIAGLHDRILEESKKRGRRNACGLLKEIEGIERSARFVNELCGGKQSCRDGVEVVDEDERWKMKMEWQSKTEMSRWSGGDGR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G439210`
TK1151 ID	TkA05G439210
OH-1004 ID	LXL04_031231
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	71.200
Protein coverage (%)	TK1151 46.018 / OH-1004 13.437 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G439210

Location Chr05:109685410-109685887 (+)

Description Similar to ROH1: Protein ROH1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g18740`	Together with TRANSTHYRETIN-LIKE protein (TTL), prevents plant growth and development, but by opposition to TTL, regulates positively cold tolerance, probably in a brassinosteroid (BR) and allantoin-dependent manner.	No verified direct reference in this release
`At1g74450`	Involved in the regulation of plant growth, and modulates pollen development to ensure male fertility.	Overexpressing the Multiple-Stress Responsive Gene At1g74450 Reduces Plant Height and Male Fertility in Arabidopsis thaliana.2015 · DOI: 10.1371/journal.pone.0140368

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031231 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006887 exocytosis Biological Process

GO:0006904 vesicle docking involved in exocytosis Biological Process

GO:0009409 response to cold Biological Process

GO:0009555 pollen development Biological Process

GO:0009631 cold acclimation Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0010214 seed coat development Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0019428 allantoin biosynthetic process Biological Process

GO:0040008 regulation of growth Biological Process

KEGG gene cross-reference

ath:AT1G18740

ath:AT1G63930

ath:AT1G74450

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.473

Rank 1 · TkA05G439210 · TK1151

Cytoplasm0.406

Rank 2 · TkA05G439210 · TK1151

Cell membrane0.101

Rank 3 · TkA05G439210 · TK1151

Mitochondrion0.097

Rank 4 · TkA05G439210 · TK1151

Endoplasmic reticulum0.047

Rank 5 · TkA05G439210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06260DUF10246-21 aa

PF05633ROH1-like15-79 aa

PF06260DUF102451-90 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G439210	`PF06260`	DUF1024	6	21	0.11	13.5
TkA05G439210	`PF05633`	ROH1-like	15	79	4.7e-14	52.9
TkA05G439210	`PF06260`	DUF1024	51	90	0.11	13.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M9U5`	Arabidopsis thaliana	sp\|Q9M9U5\|B1L_ARATH Protein BYPASS1-LIKE	55.400%	Swiss-Prot	Low
`Q9CA69`	Arabidopsis thaliana	sp\|Q9CA69\|ROH1D_ARATH Protein ROH1D	49.200%	Swiss-Prot	Medium

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