TkA05G427970 | RubberDandelionOmics

Gene overview

TkA05G427970

Reference: TK1151 Chr: Chr05 Coordinates: 106713663-106719281 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1526 bp · TkA05G427970|TK1151|cDNA

CATAGCCTTTGCTTTTCAGTTTTTTAAACCGTTATTCACAGTTTCTATATATCTTGAACTAATTTTAAATCTAAAACACCATCGTTTTCATTACCATTAACTACGAATAACAAATTCATAAGCTTTCTAATTCTATCGTCATAAAAACATGGACCCATTCTTATCCAAAATTCAACATAAACAGAATGAAGCCATTTTCATCTTCAACCTCTACTTTCATCGGAAAACCTCGACTATCGCCGTACTTTTTCACTTTCTTG...

CDS

Download CDS FASTA

1293 bp · TkA05G427970|TK1151|CDS

ATGAAGCCATTTTCATCTTCAACCTCTACTTTCATCGGAAAACCTCGACTATCGCCGTACTTTTTCACTTTCTTGGCCTTCATCCTTTTATCTTTCTTCCTCTACGTTCAAGACCTCCGTCGTATCATCGGACACCACTATCATCTCGATATTACCGTCAATCCACCGCCGTCTGCTGCCGCCGAGGATGGTTACACGAAGCTTCCGGTTTCAATCGGTGAAGAGGAGAACGGATGCGATATTTTTAGCGGGAGGTGGGT...

Protein

Download Protein FASTA

430 aa · TkA05G427970|TK1151|PROTEIN

MKPFSSSTSTFIGKPRLSPYFFTFLAFILLSFFLYVQDLRRIIGHHYHLDITVNPPPSAAAEDGYTKLPVSIGEEENGCDIFSGRWVWDPVNRPLYKEPECPYIQPQLTCQEHGRPDRDYQFWRWEPHGCSLPSFNASLMLETLRNKRMMFVGDSLNRGQFVSMACLLHSVIPKHAKSMETFGSLTVFTAKDYNATIEFYWAPFLLESNADEAVIHRISDRVVRKGSINKHGKNWKGVDIIVFNTYLWWMTGVDFKILHG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G427970`
TK1151 ID	TkA05G427970
OH-1004 ID	LXL04_021833
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G427970

Location Chr05:106713663-106719281 (-)

Description Similar to TBL33: Protein trichome birefringence-like 33

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g40320`	Probable xylan acetyltransferase that plays a role in xylan acetylation and normal deposition of secondary cell walls.	Mutations of Arabidopsis TBL32 and TBL33 Affect Xylan Acetylation and Secondary Wall Deposition.2016 · DOI: 10.1371/journal.pone.0146460
`At3g11030`	Probable xylan acetyltransferase that plays a role in xylan acetylation and normal deposition of secondary cell walls.	Mutations of Arabidopsis TBL32 and TBL33 Affect Xylan Acetylation and Secondary Wall Deposition.2016 · DOI: 10.1371/journal.pone.0146460
`At5g01620`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0817900`	Probable xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	No verified direct reference in this release
`Os05g0356700`	Probable xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	No verified direct reference in this release
`Os03g0817800`	Probable xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021833 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:1990538 xylan O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G40320

ath:AT3G11030

dosa:Os03g0817800

dosa:Os03g0817900

dosa:Os05g0356700

osa:4338521

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.510

Rank 1 · TkA05G427970 · TK1151

Cell membrane0.104

Rank 2 · TkA05G427970 · TK1151

Extracellular0.080

Rank 3 · TkA05G427970 · TK1151

Endoplasmic reticulum0.072

Rank 4 · TkA05G427970 · TK1151

Lysosome / Vacuole0.034

Rank 5 · TkA05G427970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416PMR5N78-131 aa

PF24536NXPE4_C125-211 aa

PF13839PC-Esterase132-417 aa

PF14416PMR5N287-292 aa

PF24536NXPE4_C343-369 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G427970	`PF14416`	PMR5N	78	131	2.2e-21	76.6
TkA05G427970	`PF24536`	NXPE4_C	125	211	0.001	19.4
TkA05G427970	`PF13839`	PC-Esterase	132	417	2.5e-88	297.4
TkA05G427970	`PF14416`	PMR5N	287	292	2.2e-21	76.6
TkA05G427970	`PF24536`	NXPE4_C	343	369	0.001	19.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4IH21`	Arabidopsis thaliana	sp\|F4IH21\|TBL33_ARATH Protein trichome birefringence-like 33	70.800%	Swiss-Prot	High
`Q9SRL3`	Arabidopsis thaliana	sp\|Q9SRL3\|TBL32_ARATH Protein trichome birefringence-like 32	60.400%	Swiss-Prot	High
`Q8RXQ1`	Arabidopsis thaliana	sp\|Q8RXQ1\|TBL35_ARATH Protein trichome birefringence-like 35	50.200%	Swiss-Prot	High
`Q84TW8`	Oryza sativa subsp. japonica	sp\|Q84TW8\|XOATA_ORYSJ Probable xylan O-acetyltransferase 10	67.700%	Swiss-Prot	High
`Q5W6Y3`	Oryza sativa subsp. japonica	sp\|Q5W6Y3\|XOAT9_ORYSJ Probable xylan O-acetyltransferase 9	53.400%	Swiss-Prot	High
`Q10BH4`	Oryza sativa subsp. japonica	sp\|Q10BH4\|XOATB_ORYSJ Probable xylan O-acetyltransferase 11	50.800%	Swiss-Prot	High

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