Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3252 bp · TkA05G425850|TK1151|cDNA
AAGAAGATGGGAGTGATACATCATACATGGACCCTTAACAAAACCCCCAAAACCCCTAGGCATTAGATTCTTTTTTTTTTTCTTTTCTCCAGAACATCGGCCGACCTCCATTGTTCTTCTTCCTCGCCGGTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTGTCTCTCTCGCTCGCGATTGCCGTTGCGACTAGACTGAAATTGTCATGAAATTTGTCAATGGGGGAAGAATTGACCTCTGATT...
2763 bp · TkA05G425850|TK1151|CDS
ATGGGGGAAGAATTGACCTCTGATTCTACTGCAACAACAGAGGATAAAAACACAATTCAAGCAGAAGATAGTAATGCTGAAGAAGAAGAAGAAAATGATGATGGTGATGAAGAAGAAGAAGAAGAAGAAGAAGATGCAGAAGAGCCTTTTACATTAAGATTTGAAGGAGAGACAAATCCCTTGGCTCTCACGGAAGTGGATGCATTTGGAGCTCAGCCTTATGAGCAATTGGAACGCCTGGAGAATGAGTATGAAGCTTT...
Protein
Download Protein FASTA920 aa · TkA05G425850|TK1151|PROTEIN
MGEELTSDSTATTEDKNTIQAEDSNAEEEEENDDGDEEEEEEEEDAEEPFTLRFEGETNPLALTEVDAFGAQPYEQLERLENEYEALAAKKRKANNHQGMVPGKKLRQEDFPGANFEELLAEMTYGMRRKRKIKKRGRRKGSKRKLSPEITQKLGDATLHYAHGDYEKAIPLLKEIILSSPNLPDPYHTLGLIYNATGKKKKAIDFYMLAVHLTPKDASLWKLLVTWSLEQGNHGQARYCLDRAIRADPEDVGLRYHRAS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G425850 |
|---|---|
| TK1151 ID | TkA05G425850 |
| OH-1004 ID | LXL04_007770 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 92.100 |
| Protein coverage (%) | TK1151 99.674 / OH-1004 98.394Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G425850 |
|---|---|
| Location | Chr05:106202641-106214352 (+) |
| Description | Similar to GTF3C3: General transcription factor 3C polypeptide 3 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006383 transcription by RNA polymerase III Biological Process GO:0006384 transcription initiation at RNA polymerase III promoter Biological Process GO:0042791 5S class rRNA transcription by RNA polymerase III Biological Process GO:0042797 tRNA transcription by RNA polymerase III Biological Process GO:0000127 transcription factor TFIIIC complex Cellular Component GO:0001650 fibrillar center Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0031965 nuclear membrane Cellular Component GO:0000995 RNA polymerase III general transcription initiation factor activity Molecular Function |
| KEGG gene cross-reference | hsa:9330 sce:YGR047C spo:2539187 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12569NatA_aux_su20-62 aaPF25068ARM_TT21_4th140-175 aaPF09613HrpB1_HrpK146-184 aaPF29407CFAP70_TPR_C149-354 aaPF30993CABIN1_N150-177 aaPF24575TPR_Slam152-184 aaPF13429TPR_15153-175 aaPF04733Coatomer_E153-210 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G425850 | PF12569 | NatA_aux_su | 20 | 62 | 0.25 | 10.9 |
| TkA05G425850 | PF25068 | ARM_TT21_4th | 140 | 175 | 3.5e-05 | 24.8 |
| TkA05G425850 | PF09613 | HrpB1_HrpK | 146 | 184 | 0.03 | 14.7 |
| TkA05G425850 | PF29407 | CFAP70_TPR_C | 149 | 354 | 3.8e-13 | 50.2 |
| TkA05G425850 | PF30993 | CABIN1_N | 150 | 177 | 0.011 | 16.1 |
| TkA05G425850 | PF24575 | TPR_Slam | 152 | 184 | 7.7e-05 | 23.7 |
| TkA05G425850 | PF13429 | TPR_15 | 153 | 175 | 2.9e-07 | 30.9 |
| TkA05G425850 | PF04733 | Coatomer_E | 153 | 210 | 0.012 | 15.8 |
| TkA05G425850 | PF25058 | ARM_TT21 | 154 | 199 | 0.00018 | 22.2 |
| TkA05G425850 | PF10602 | RPN7 | 156 | 177 | 0.00021 | 21.8 |
| TkA05G425850 | PF13428 | TPR_14 | 157 | 189 | 1.1e-17 | 63.5 |
| TkA05G425850 | PF13432 | TPR_16 | 157 | 218 | 1.7e-11 | 45.0 |
| TkA05G425850 | PF25063 | ARM_TT21_C | 157 | 215 | 8e-05 | 23.3 |
| TkA05G425850 | PF14561 | TPR_20 | 157 | 179 | 0.00031 | 21.7 |
| TkA05G425850 | PF25064 | ARM_TT21_5th | 157 | 206 | 0.00042 | 21.3 |
| TkA05G425850 | PF22860 | DUF7017 | 157 | 247 | 0.002 | 18.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.