RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G420260
Reference: TK1151 Chr: Chr05 Coordinates: 104679980-104686232 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4117 bp · TkA05G420260|TK1151|cDNA

CTCACATCTCTCTCTATATATATGCATTCCTTTCATTGATTACTTATTCAAAAACCACATATATTCTATCTTAACCAATAAACACACAGATGGGAAATTTATGCTCATCTTCTTGTGATCCCAAACAGATGGCAAGTTCGCCCACATCATCTTCTAATCCCACACAGATGGCGAGTTCATCCTCATCTCCTTCCGATCCAGCCAATTATTCTCAGTCGTGGTCTTACCATGTTTTTCTTAGCTTTAGAGGAGGCGATACT...

CDS

Download CDS FASTA

3309 bp · TkA05G420260|TK1151|CDS

ATGGGAAATTTATGCTCATCTTCTTGTGATCCCAAACAGATGGCAAGTTCGCCCACATCATCTTCTAATCCCACACAGATGGCGAGTTCATCCTCATCTCCTTCCGATCCAGCCAATTATTCTCAGTCGTGGTCTTACCATGTTTTTCTTAGCTTTAGAGGAGGCGATACTCGCTTGAAATTTGTCGGTCATCTCTATAAAGCTCTTATTGGTATGGGAATCCGCACCTATAGGGACGACAAAGAAATTTATTATGGTGA...

Protein

Download Protein FASTA

1102 aa · TkA05G420260|TK1151|PROTEIN

MGNLCSSSCDPKQMASSPTSSSNPTQMASSSSSPSDPANYSQSWSYHVFLSFRGGDTRLKFVGHLYKALIGMGIRTYRDDKEIYYGESIDTSVMEAIKESQIAIIVFSENFADSSWCMSELVYINDCMKKRGLTIVPIFYDVKPTVVRKQKQKYGKALSKHESRKGTDVVASWRKALTEVSSHSGDEFMSASMDESEFIKKIVNGISKMTRPLTPWKNDKLVGMEDRMHNLISQMQIGLDVVLMIGIWGVGGSGKTTLAN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G420260
TK1151 IDTkA05G420260
OH-1004 IDLXL04_021772
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)83.900
Protein coverage (%)TK1151 96.552 / OH-1004 95.953
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G420260
LocationChr05:104679980-104686232 (-)
DescriptionSimilar to N: TMV resistance protein N
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g44510 TIR-NB-LRR receptor-like protein that contributes to disease resistance induced by the Pseudomonas syringae type III effector AvrB.
Arabidopsis TAO1 is a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB.2008 · DOI: 10.1073/pnas.0802157105

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021772 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT5G44510
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.378
Rank 1 · TkA05G420260 · TK1151
Cytoplasm0.336
Rank 2 · TkA05G420260 · TK1151
Nucleus0.292
Rank 3 · TkA05G420260 · TK1151
Endoplasmic reticulum0.090
Rank 4 · TkA05G420260 · TK1151
Plastid0.056
Rank 5 · TkA05G420260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582TIR46-220 aa
PF13676TIR_248-145 aa
PF23282WHD_ROQ1227-235 aa
PF00931NB-ARC233-390 aa
PF13238AAA_18245-303 aa
PF13401AAA_22246-342 aa
PF00004AAA247-363 aa
PF05729NACHT247-370 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G420260PF01582TIR462203.4e-46158.0
TkA05G420260PF13676TIR_2481455.9e-1453.3
TkA05G420260PF23282WHD_ROQ12272358e-1555.5
TkA05G420260PF00931NB-ARC2333905e-2279.0
TkA05G420260PF13238AAA_182453030.1613.2
TkA05G420260PF13401AAA_222463420.1313.3
TkA05G420260PF00004AAA2473630.0216.1
TkA05G420260PF05729NACHT2473700.02914.9
TkA05G420260PF20720nSTAND32472830.0414.3
TkA05G420260PF23286LRR_133333791.7e-0628.6
TkA05G420260PF20720nSTAND34294720.0414.3
TkA05G420260PF23282WHD_ROQ14655298e-1555.5
TkA05G420260PF01582TIR5516033.4e-46158.0
TkA05G420260PF25019LRR_R13L1-DRL216306670.0005420.6
TkA05G420260PF23286LRR_136357031.7e-0628.6
TkA05G420260PF12799LRR_46446774.1e-0627.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FI14Arabidopsis thalianasp|Q9FI14|TAO1_ARATH Disease resistance protein TAO132.400%Swiss-ProtMedium

JBrowse

View in Genome Browser