TkA05G419210 | RubberDandelionOmics

Gene overview

TkA05G419210

Reference: TK1151 Chr: Chr05 Coordinates: 104415303-104416490 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

948 bp · TkA05G419210|TK1151|cDNA

ATGGCGTTCCCGGAGGAGATACCTCAACCGGTCGTACCTACAAAACGACGATTAGATGATGATGATGACTGTGAACTTGCCGAATTAAAAAAACCTAAAACAGTCGTTCAGAAGTATCCCCCTCCAAAAATCAGGCTTGGAGTACAAGTTAGTCGTGATTTCCCTCCCGGTTGTGGAATCATACACTCTAAGCATTTTGAAAGTAAAAAACTCAATTATAGCTTTAAACCCAAAGGATTAGGGTTAAAAAAATCTTATTT...

CDS

Download CDS FASTA

948 bp · TkA05G419210|TK1151|CDS

ATGGCGTTCCCGGAGGAGATACCTCAACCGGTCGTACCTACAAAACGACGATTAGATGATGATGATGACTGTGAACTTGCCGAATTAAAAAAACCTAAAACAGTCGTTCAGAAGTATCCCCCTCCAAAAATCAGGCTTGGAGTACAAGTTAGTCGTGATTTCCCTCCCGGTTGTGGAATCATACACTCTAAGCATTTTGAAAGTAAAAAACTCAATTATAGCTTTAAACCCAAAGGATTAGGGTTAAAAAAATCTTATTT...

Protein

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315 aa · TkA05G419210|TK1151|PROTEIN

MAFPEEIPQPVVPTKRRLDDDDDCELAELKKPKTVVQKYPPPKIRLGVQVSRDFPPGCGIIHSKHFESKKLNYSFKPKGLGLKKSYFGTKSSNKVKFWDPMQHVVDDIPPVYGIIAMAAKITIQKLKWMSPEKSLGEISGIEIGDKFKFRSQLQMVGLHSQPNCGIDYIDINGKNLAISIVDSRRYSKEIGQSRDVLSYCGEGGGRVQFGFSKGHVANDDQKLVRGNLALKNSMKEKSPIRVIRKVVGVGKNNYFFVYDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G419210`
TK1151 ID	TkA05G419210
OH-1004 ID	LXL04_036197
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	38.800
Protein coverage (%)	TK1151 49.841 / OH-1004 22.270 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G419210

Location Chr05:104415303-104416490 (-)

Description Similar to SUVH1: Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47150`	YDG domain-containing protein At5g47150.	No verified direct reference in this release
`At2g35160`	Histone methyltransferase.	No verified direct reference in this release
`At5g47160`	YDG domain-containing protein At5g47160.	No verified direct reference in this release
`At2g22740`	Histone methyltransferase.	Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana.2004 · DOI: 10.1007/s00412-004-0275-7 H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases.2005 · DOI: 10.1128/mcb.25.23.10507-10515.2005

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036197 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008361 regulation of cell size Biological Process

GO:0032259 methylation Biological Process

GO:0040029 epigenetic regulation of gene expression Biological Process

GO:0048366 leaf development Biological Process

GO:0000775 chromosome, centromeric region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005694 chromosome Cellular Component

GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific Molecular Function

GO:0003690 double-stranded DNA binding Molecular Function

GO:0008168 methyltransferase activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0010385 double-stranded methylated DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G17770

ath:AT1G73100

ath:AT2G24740

ath:AT5G04940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.772

Rank 1 · TkA05G419210 · TK1151

Cytoplasm0.233

Rank 2 · TkA05G419210 · TK1151

Cell membrane0.061

Rank 3 · TkA05G419210 · TK1151

Endoplasmic reticulum0.038

Rank 4 · TkA05G419210 · TK1151

Plastid0.027

Rank 5 · TkA05G419210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02182SAD_SRA135-289 aa

PF28048CiaI165-240 aa

PF26348SRA_ScoMcrA214-290 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G419210	`PF02182`	SAD_SRA	135	289	2.1e-38	132.1
TkA05G419210	`PF28048`	CiaI	165	240	0.3	11.6
TkA05G419210	`PF26348`	SRA_ScoMcrA	214	290	0.00065	20.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FHI0`	Arabidopsis thaliana	sp\|Q9FHI0\|YDG1_ARATH YDG domain-containing protein At5g47150	41.700%	Swiss-Prot	Medium
`O82175`	Arabidopsis thaliana	sp\|O82175\|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5	40.100%	Swiss-Prot	Medium
`Q9LVU3`	Arabidopsis thaliana	sp\|Q9LVU3\|YDG2_ARATH YDG domain-containing protein At5g47160	41.400%	Swiss-Prot	Low
`Q8VZ17`	Arabidopsis thaliana	sp\|Q8VZ17\|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6	40.500%	Swiss-Prot	Low

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