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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G418740
Reference: TK1151 Chr: Chr05 Coordinates: 104316182-104319021 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1076 bp · TkA05G418740|TK1151|cDNA

AGTACAACGAGGTATCGTAAATTTCAATGCTTATTAACATTCTGTCTCAGTTCTTCCCCTCTCTGTTCCTATGATCCCCGCCATCTCATCTGATTCATCTTCTCCTACAAACACCGATCACAATTCTCTGTAATCTCACGGCGGAGATCCAATTCCACCGTCACACCAGACGGCCGTCGGAGGTTAGGATCAGTCGGACTTTTTTACAGACGGCTACATTGTATCTATCATGAATGCCGAGTACGATTATTTGTTCAAGC...

CDS

Download CDS FASTA

609 bp · TkA05G418740|TK1151|CDS

ATGAATGCCGAGTACGATTATTTGTTCAAGCTTTTGCTGATTGGAGATTCAGGAGTTGGCAAATCGTGTCTTCTTCTCAGATTTGCTGATGACTCATATCTTGACAGTTATATCAGCACAATCGGTGTCGACTTTAAAATTCGCACTGTGGATCAAGACGGAAAAACCATTAAGCTGCAAATCTGGGACACAGCTGGACAAGAAAGGTTCAGAACAATTACTAGCAGCTACTATCGTGGGGCCCACGGGATTATCATAGT...

Protein

Download Protein FASTA

202 aa · TkA05G418740|TK1151|PROTEIN

MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDLESFNNVKQWLSEIDRYASENVNKLLVGNKCDLAESRAVSFDTAKEFADEIGIPFMETSAKDATNVEQAFMAMSADIKNRMASQPSSNKKPPTVQIKGQPISQKGGCCSS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G418740
TK1151 IDTkA05G418740
OH-1004 IDLXL04_021758
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 97.525 / OH-1004 97.044
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G418740
LocationChr05:104316182-104319021 (-)
DescriptionSimilar to RABD2A: Ras-related protein RABD2a
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g17530 Protein transport. No verified direct reference in this release
At1g02130 Protein transport.
A rab1 GTPase is required for transport between the endoplasmic reticulum and golgi apparatus and for normal golgi movement in plants.2000 · DOI: 10.1105/tpc.12.11.2201
Redistribution of membrane proteins between the Golgi apparatus and endoplasmic reticulum in plants is reversible and not dependent on cytoskeletal networks.2002 · DOI: 10.1046/j.0960-7412.2002.01252.x
At5g47200 Protein transport. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0558600 Possesses GTPase activity. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021758 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process
GO:0009555 pollen development Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0015031 protein transport Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT1G02130
ath:AT4G17530
ath:AT5G47200
dosa:Os01g0558600
zma:542396
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.491
Rank 1 · TkA05G418740 · TK1151
Golgi apparatus0.480
Rank 2 · TkA05G418740 · TK1151
Lysosome / Vacuole0.169
Rank 3 · TkA05G418740 · TK1151
Cell membrane0.147
Rank 4 · TkA05G418740 · TK1151
Endoplasmic reticulum0.147
Rank 5 · TkA05G418740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf9-129 aa
PF00071Ras10-170 aa
PF08477Roc10-124 aa
PF04670Gtr1_RagA10-127 aa
PF02421FeoB_N10-161 aa
PF10662PduV-EutP10-62 aa
PF05621TniB10-31 aa
PF00009GTP_EFTU11-25 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G418740PF00025Arf91297.7e-1658.8
TkA05G418740PF00071Ras101703.8e-68228.9
TkA05G418740PF08477Roc101241.6e-36125.8
TkA05G418740PF04670Gtr1_RagA101270.0002821.1
TkA05G418740PF02421FeoB_N101610.00119.3
TkA05G418740PF10662PduV-EutP10620.05813.9
TkA05G418740PF05621TniB10310.2411.6
TkA05G418740PF00009GTP_EFTU11251e-0525.9
TkA05G418740PF01926MMR_HSR1111216.2e-0523.8
TkA05G418740PF09439SRPRB111320.0002721.1
TkA05G418740PF00004AAA11910.004518.2
TkA05G418740PF13555AAA_2911250.0913.3
TkA05G418740PF13191AAA_1611300.1313.5
TkA05G418740PF13401AAA_2211310.1712.9
TkA05G418740PF00005ABC_tran11310.2612.6
TkA05G418740PF03193RsgA_GTPase12301e-0629.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SEH3Arabidopsis thalianasp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c85.600%Swiss-ProtHigh
P28188Arabidopsis thalianasp|P28188|RAD2A_ARATH Ras-related protein RABD2a86.700%Swiss-ProtHigh
Q9FPJ4Arabidopsis thalianasp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b85.100%Swiss-ProtHigh
P40392Oryza sativa subsp. japonicasp|P40392|RIC1_ORYSJ Ras-related protein RIC184.200%Swiss-ProtHigh

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