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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G418670
Reference: TK1151 Chr: Chr05 Coordinates: 104292909-104294459 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1028 bp · TkA05G418670|TK1151|cDNA

CACTTTTTACTTTCTACCTGTACCTCCGATTTGCCATATAAATACATAAATATATATATATATATATATATATCAAACTGGAATCGATTTCATGGCTTGTTCATAGCAGTACAGTTTGGCGATTTGGAGATTGTGAAGTCTATTTTGGAAAGAGATCCGTGTCTTCCTCAACAAAAGACTGATTATAATCTCCATTCTGCTCTTCACATAGCTGCTGTCAATGGCCAGATCGAGCATCTCGTTTTCATCCAGATTATGTC...

CDS

Download CDS FASTA

825 bp · TkA05G418670|TK1151|CDS

CACTTTTTACTTTCTACCTGTACCTCCGATTTGCCATATAAATACATAAATATATATATATATATATATATATCAAACTGGAATCGATTTCATGGCTTGTTCATAGCAGTACAGTTTGGCGATTTGGAGATTGTGAAGTCTATTTTGGAAAGAGATCCGTGTCTTCCTCAACAAAAGACTGATTATAATCTCCATTCTGCTCTTCACATAGCTGCTGTCAATGGCCAGATCGAGCATCTCGTTTTCATCCAGATTATGTC...

Protein

Download Protein FASTA

274 aa · TkA05G418670|TK1151|PROTEIN

HFLLSTCTSDLPYKYINIYIYIYISNWNRFHGLFIAVQFGDLEIVKSILERDPCLPQQKTDYNLHSALHIAAVNGQIEHLVFIQIMSEKPPRILKGSNIVVSKYARDAQIVSAEFVKSSVETEACPSDGSPEFALVGRSNVGKSSLLNSIVKRKKLALTSKKPGKTQCINHFRINDSWYIVDLPGYGYASAPHELKQDWNKFTKDYFLNRSTLVSVFLLHESTKEYYGIKEHGQMVVHQRPQLGHWITEADVVELEALVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G418670
TK1151 IDTkA05G418670
OH-1004 IDLXL04_021754
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.600
Protein coverage (%)TK1151 88.321 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G418670
LocationChr05:104292909-104294459 (-)
DescriptionSimilar to EMB2001: GTP-binding protein At2g22870
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g22870 GTP-binding protein At2g22870. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021754 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009507 chloroplast Cellular Component
GO:0005525 GTP binding Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G22870
bfr:BF2048
bth:BT_1083
bvu:BVU_2968
fjo:Fjoh_1800
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.467
Rank 1 · TkA05G418670 · TK1151
Nucleus0.286
Rank 2 · TkA05G418670 · TK1151
Mitochondrion0.144
Rank 3 · TkA05G418670 · TK1151
Endoplasmic reticulum0.107
Rank 4 · TkA05G418670 · TK1151
Peroxisome0.089
Rank 5 · TkA05G418670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13555AAA_2923-33 aa
PF13857Ank_530-71 aa
PF12796Ank_233-79 aa
PF13606Ank_333-51 aa
PF00023Ank33-51 aa
PF13637Ank_433-78 aa
PF13555AAA_2955-65 aa
PF13606Ank_365-80 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G418670PF13555AAA_2923330.04614.2
TkA05G418670PF13857Ank_530710.2112.8
TkA05G418670PF12796Ank_233790.0001922.7
TkA05G418670PF13606Ank_333510.003718.4
TkA05G418670PF00023Ank33510.00517.8
TkA05G418670PF13637Ank_433780.07714.1
TkA05G418670PF13555AAA_2955650.04614.2
TkA05G418670PF13606Ank_365800.003718.4
TkA05G418670PF00023Ank65780.00517.8
TkA05G418670PF09439SRPRB1301860.1412.2
TkA05G418670PF13555AAA_291321500.04614.2
TkA05G418670PF01926MMR_HSR11332194.2e-1659.8
TkA05G418670PF02421FeoB_N1331909.8e-0522.6
TkA05G418670PF03193RsgA_GTPase1341850.0001622.2
TkA05G418670PF00350Dynamin_N1341710.000421.2
TkA05G418670PF08477Roc1341550.07714.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81004Arabidopsis thalianasp|O81004|Y2287_ARATH GTP-binding protein At2g2287058.400%Swiss-ProtMedium

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