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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G418490
Reference: TK1151 Chr: Chr05 Coordinates: 104213532-104225583 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6790 bp · TkA05G418490|TK1151|cDNA

ACCGTCTTGGCATAAACATGAAAACATAAACCCTAGAAGGGCTTAACACCCGCGCCATCTCATTCGAAGTCGGTAGGCCTCCTTGTCGCTTACCACCAGCAACCACTTCTACTCTGGGTTTAGGGTTTATCATAACCAGTCGGAACTACAACTCCATTTGGTTCAATACAATCAGTTTAGGATTCCAACAATCTCTATTTATTCATCTTCAAAGGAAAAACAATGGCGACGTCAATCGCCTCACAGCTGCAGGCAATCAG...

CDS

Download CDS FASTA

6372 bp · TkA05G418490|TK1151|CDS

ATGGCGACGTCAATCGCCTCACAGCTGCAGGCAATCAGGTCAATTGTTAAGGCCGATACAGACCCTGTTAAAAGGCCGTTTACCCGTCCCTCCATCTTGTTTGACGCCAAAAAAGCAGCTGATACCGACCTCGATACTCTCTTTGACCTCGCCGTTTCAGGGTTGGAGGGTCTTGTGAGTCTGGATGAAAGATTTGGGAACTACAGGAATGATTTGTTCTCTCATAAGAGTAGAGAGCTGGATAGAGAGCTGTTGGGCGT...

Protein

Download Protein FASTA

2123 aa · TkA05G418490|TK1151|PROTEIN

MATSIASQLQAIRSIVKADTDPVKRPFTRPSILFDAKKAADTDLDTLFDLAVSGLEGLVSLDERFGNYRNDLFSHKSRELDRELLGVEENNHINASISSYLRLLSGHFESLSALKTLEYLIRRYKIHVYNIEELVLCALPYHDTPLFVRIVQLIDTGNGKWKFLEGVKTSGAPPPRKVIVHQCMRDMGVLEALCNYAIPTKKFQASRPVISFCTAVVIEVLGSLAVIETDVVKRVLPYVISGLQTHSKGNIDHKAGALMI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G418490
TK1151 IDTkA05G418490
OH-1004 IDLXL04_021749
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G418490
LocationChr05:104213532-104225583 (-)
DescriptionSimilar to At3g06530: Uncharacterized protein At3g06530
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g06530 Involved in nucleolar processing of pre-18S ribosomal RNA. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021749 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0016072 rRNA metabolic process Biological Process
GO:0030490 maturation of SSU-rRNA Biological Process
GO:0042274 ribosomal small subunit biogenesis Biological Process
GO:0043487 regulation of RNA stability Biological Process
GO:0045943 positive regulation of transcription by RNA polymerase I Biological Process
GO:0061351 neural precursor cell proliferation Biological Process
GO:1902570 protein localization to nucleolus Biological Process
GO:2000234 positive regulation of rRNA processing Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0001650 fibrillar center Cellular Component
KEGG gene cross-reference
ath:AT3G06530
dre:334446
hsa:55127
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.814
Rank 1 · TkA05G418490 · TK1151
Cytoplasm0.197
Rank 2 · TkA05G418490 · TK1151
Golgi apparatus0.043
Rank 3 · TkA05G418490 · TK1151
Endoplasmic reticulum0.031
Rank 4 · TkA05G418490 · TK1151
Cell membrane0.031
Rank 5 · TkA05G418490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24714TOR1L1_N212-285 aa
PF24987HEAT_EF3_N227-267 aa
PF12397U3snoRNP10231-356 aa
PF08146BP28CT232-289 aa
PF23243HEAT_HEATR1303-454 aa
PF23271HEAT_GCN1346-460 aa
PF24714TOR1L1_N346-442 aa
PF12397U3snoRNP10371-428 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G418490PF24714TOR1L1_N2122850.000819.5
TkA05G418490PF24987HEAT_EF3_N2272672.1e-0525.3
TkA05G418490PF12397U3snoRNP102313563e-2279.9
TkA05G418490PF08146BP28CT2322891.8e-33116.2
TkA05G418490PF23243HEAT_HEATR13034544.6e-44151.4
TkA05G418490PF23271HEAT_GCN13464604.7e-0524.3
TkA05G418490PF24714TOR1L1_N3464420.000819.5
TkA05G418490PF12397U3snoRNP103714283e-2279.9
TkA05G418490PF02985HEAT4774943.9e-0524.2
TkA05G418490PF23271HEAT_GCN14795344.7e-0524.3
TkA05G418490PF24714TOR1L1_N4825860.000819.5
TkA05G418490PF02985HEAT5155323.9e-0524.2
TkA05G418490PF11841ELMO_ARM5526255.97.5
TkA05G418490PF12397U3snoRNP105676363e-2279.9
TkA05G418490PF24477ARM_At3g065306308251.2e-69234.5
TkA05G418490PF25782TPR_CAND17417620.6111.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C8Z4Arabidopsis thalianasp|Q9C8Z4|HEAT1_ARATH Uncharacterized protein At3g0653045.100%Swiss-ProtMedium

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