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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G415820
Reference: TK1151 Chr: Chr05 Coordinates: 103469663-103471474 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1812 bp · TkA05G415820|TK1151|cDNA

ATGGGAGAACCTTCACCACCACAACCACCACCCACGGCGCCACCCATCAAAACCTACACATTAAAAGCATCATCAATTTCCTACACCAAATCCATCACCGCCACCACCACCACCGCCTCAATTACACAATTTCTACTCTTCAACCCATGCACCGCCACCACACCACCAACTTCAATCCTCGATAACATCTCCCTCACCGCTTACCCATCCGAAATCCTCGCCATCGTCGGCCCTAGTGGCGCCGGAAAATCAACTCTGCT...

CDS

Download CDS FASTA

1812 bp · TkA05G415820|TK1151|CDS

ATGGGAGAACCTTCACCACCACAACCACCACCCACGGCGCCACCCATCAAAACCTACACATTAAAAGCATCATCAATTTCCTACACCAAATCCATCACCGCCACCACCACCACCGCCTCAATTACACAATTTCTACTCTTCAACCCATGCACCGCCACCACACCACCAACTTCAATCCTCGATAACATCTCCCTCACCGCTTACCCATCCGAAATCCTCGCCATCGTCGGCCCTAGTGGCGCCGGAAAATCAACTCTGCT...

Protein

Download Protein FASTA

603 aa · TkA05G415820|TK1151|PROTEIN

MGEPSPPQPPPTAPPIKTYTLKASSISYTKSITATTTTASITQFLLFNPCTATTPPTSILDNISLTAYPSEILAIVGPSGAGKSTLLDILAARTAPTTGALLLNSAPLTPSTYRKLSAYVPQHDSSLPVLTVAETFAFAAGLLQPKAAQISDVVSSLLIELRLAHLAHSRLGHNLSGGERRRVSIGLSLLHDPGILLLDEPTSGLDSSSAYNVMQTLRSIATSRRRTVILSIHQPSFKILSIIDKILLLSKGKVVYHGTL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G415820
TK1151 IDTkA05G415820
OH-1004 IDLXL04_021631
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G415820
LocationChr05:103469663-103471474 (+)
DescriptionSimilar to ABCG8: ABC transporter G family member 8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g52860 ABC transporter G family member 8. No verified direct reference in this release
At4g25750 ABC transporter G family member 4. No verified direct reference in this release
At5g19410 ABC transporter G family member 23. No verified direct reference in this release
At1g53270 ABC transporter G family member 10. No verified direct reference in this release
At2g13610 ABC transporter G family member 5. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021631 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0055085 transmembrane transport Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0042626 ATPase-coupled transmembrane transporter activity Molecular Function
GO:0140359 ABC-type transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G53270
ath:AT2G13610
ath:AT4G25750
ath:AT5G19410
ath:AT5G52860
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.343
Rank 1 · TkA05G415820 · TK1151
Endoplasmic reticulum0.250
Rank 2 · TkA05G415820 · TK1151
Lysosome / Vacuole0.234
Rank 3 · TkA05G415820 · TK1151
Cytoplasm0.101
Rank 4 · TkA05G415820 · TK1151
Golgi apparatus0.068
Rank 5 · TkA05G415820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00005ABC_tran60-203 aa
PF03215Rad1760-95 aa
PF13604AAA_3069-200 aa
PF13555AAA_2970-93 aa
PF03193RsgA_GTPase70-99 aa
PF02463SMC_N70-89 aa
PF25199nSTAND_NTPase570-113 aa
PF13481AAA_2570-103 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G415820PF00005ABC_tran602031.9e-30107.0
TkA05G415820PF03215Rad1760950.004217.8
TkA05G415820PF13604AAA_30692000.0613.8
TkA05G415820PF13555AAA_2970930.0001722.0
TkA05G415820PF03193RsgA_GTPase70990.00318.1
TkA05G415820PF02463SMC_N70890.003917.3
TkA05G415820PF25199nSTAND_NTPase5701130.2212.0
TkA05G415820PF13481AAA_25701030.3511.2
TkA05G415820PF13401AAA_22712220.00617.6
TkA05G415820PF13191AAA_16711360.008617.3
TkA05G415820PF13476AAA_2371910.01816.4
TkA05G415820PF20703nSTAND171870.2711.6
TkA05G415820PF20720nSTAND371940.2811.6
TkA05G415820PF13304AAA_2172913.5e-0937.8
TkA05G415820PF13521AAA_2874930.05214.5
TkA05G415820PF13671AAA_33741000.07314.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FLX5Arabidopsis thalianasp|Q9FLX5|AB8G_ARATH ABC transporter G family member 870.100%Swiss-ProtHigh
Q9SW08Arabidopsis thalianasp|Q9SW08|AB4G_ARATH ABC transporter G family member 468.000%Swiss-ProtHigh
Q3E9B8Arabidopsis thalianasp|Q3E9B8|AB23G_ARATH ABC transporter G family member 2345.400%Swiss-ProtMedium
Q9MAH4Arabidopsis thalianasp|Q9MAH4|AB10G_ARATH ABC transporter G family member 1043.300%Swiss-ProtMedium
Q9SIT6Arabidopsis thalianasp|Q9SIT6|AB5G_ARATH ABC transporter G family member 542.000%Swiss-ProtMedium

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