TkA05G414590 | RubberDandelionOmics

Gene overview

TkA05G414590

Reference: TK1151 Chr: Chr05 Coordinates: 103164904-103166217 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

960 bp · TkA05G414590|TK1151|cDNA

GGCCATTGACGACGTAATGAGACGATAAACAACAGAGTTTTAAGATACACAAGGAACAGTCTGTTAATGGTAGGTGTCTCCAGCTCATTCAACGTCCTGCAGTCTATATATCAAAAACCTCCACGCCATCAATCTTCACAAACTCATAAACCTTTTATTTCTAAACCTTAAACAAAATATGGCGGCAGAAGAAGCAAAGAAGGTAGAGAACGTGGAACCTGAGTGCGCGGCGGAGCTACCACCTCCTCCTCCAACCACCG...

CDS

Download CDS FASTA

585 bp · TkA05G414590|TK1151|CDS

ATGGCGGCAGAAGAAGCAAAGAAGGTAGAGAACGTGGAACCTGAGTGCGCGGCGGAGCTACCACCTCCTCCTCCAACCACCGACGTGGAGAACAAACCCCCCGTTCATGAAGAAAAGCCCACCGAAGAAGCCAAAACCGTTGCCGTTGAAGAAAAGACGGAGAAGGAAACAGAGCCGTGTGTGGAGAAACCTGCAGAAGGCGCGGAGGACAGAGATGTTGTTCTGGCTCGAGTCGCAACGGAGAAGAAAGGTGCGCTCAT...

Protein

Download Protein FASTA

194 aa · TkA05G414590|TK1151|PROTEIN

MAAEEAKKVENVEPECAAELPPPPPTTDVENKPPVHEEKPTEEAKTVAVEEKTEKETEPCVEKPAEGAEDRDVVLARVATEKKGALIKAWEESETSKIDNKAEKKLAAIGAWENSKKAELEAELKKIEENLEKKKAKYIEKMKNKVALLHKLAEEKRANTEAKRGEDLLKAEEVAAKCRATGAPPKKLLRWFSK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G414590`
TK1151 ID	TkA05G414590
OH-1004 ID	LXL04_021662
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G414590

Location Chr05:103164904-103166217 (+)

Description Similar to Remorin

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45820`	Exhibits a non sequence-specific DNA-binding activity.	No verified direct reference in this release
`At3g61260`	Uncharacterized protein At3g61260.	No verified direct reference in this release
`At5g23750`	Remorin 1.4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021662 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007267 cell-cell signaling Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0010555 response to mannitol Biological Process

GO:0051607 defense response to virus Biological Process

GO:0051665 membrane raft localization Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT2G45820

ath:AT3G57540

ath:AT3G61260

ath:AT5G23750

sot:102577743

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.530

Rank 1 · TkA05G414590 · TK1151

Cytoplasm0.337

Rank 2 · TkA05G414590 · TK1151

Nucleus0.199

Rank 3 · TkA05G414590 · TK1151

Endoplasmic reticulum0.061

Rank 4 · TkA05G414590 · TK1151

Mitochondrion0.043

Rank 5 · TkA05G414590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15050SCIMP3-73 aa

PF03766Remorin_N25-78 aa

PF25974GVIN130-56 aa

PF03763Remorin_C42-58 aa

PF09340NuA481-104 aa

PF03763Remorin_C82-187 aa

PF25974GVIN188-155 aa

PF14735HAUS490-181 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G414590	`PF15050`	SCIMP	3	73	4.3	8.5
TkA05G414590	`PF03766`	Remorin_N	25	78	3.9e-07	30.7
TkA05G414590	`PF25974`	GVIN1	30	56	0.0074	17.0
TkA05G414590	`PF03763`	Remorin_C	42	58	8.4e-34	116.3
TkA05G414590	`PF09340`	NuA4	81	104	9.5	6.9
TkA05G414590	`PF03763`	Remorin_C	82	187	8.4e-34	116.3
TkA05G414590	`PF25974`	GVIN1	88	155	0.0074	17.0
TkA05G414590	`PF14735`	HAUS4	90	181	0.0012	19.3
TkA05G414590	`PF19658`	DUF6161	92	145	1.1	9.8
TkA05G414590	`PF22175`	Ogg-HhH	102	163	0.054	13.8
TkA05G414590	`PF27291`	AF_1457	105	150	0.4	11.7
TkA05G414590	`PF09340`	NuA4	115	142	9.5	6.9
TkA05G414590	`PF03766`	Remorin_N	126	136	3.9e-07	30.7
TkA05G414590	`PF15050`	SCIMP	130	130	4.3	8.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80837`	Arabidopsis thaliana	sp\|O80837\|REMO_ARATH Remorin	46.100%	Swiss-Prot	Medium
`Q9M2D8`	Arabidopsis thaliana	sp\|Q9M2D8\|Y3126_ARATH Uncharacterized protein At3g61260	51.900%	Swiss-Prot	Medium
`Q9FFA5`	Arabidopsis thaliana	sp\|Q9FFA5\|RMR14_ARATH Remorin 1.4	40.200%	Swiss-Prot	Medium

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