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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G410740
Reference: TK1151 Chr: Chr05 Coordinates: 102182911-102187820 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1912 bp · TkA05G410740|TK1151|cDNA

TTACAATCTATCTTTGCCCTACTCATCGCTGTGGTCGTTTGCTCTCTATCTGCCGACTCTAAATCACGATTTCTTTATTCTTTATTACGTTCTTCCCAGTTTCAAACCCTAATTTCCGAAGCAAACATTAGCTTCATTGTCTACATCAGTTTATAGCGCGAGATGGCATCTGTCTCCAGTCAGCCTCAGTTCCGGTACACACAGACTCCATCAAAGGTTCTTCATCTGAGAAACTTGCCATGGGAGTGCACTGAAGAGGA...

CDS

Download CDS FASTA

1419 bp · TkA05G410740|TK1151|CDS

ATGGCATCTGTCTCCAGTCAGCCTCAGTTCCGGTACACACAGACTCCATCAAAGGTTCTTCATCTGAGAAACTTGCCATGGGAGTGCACTGAAGAGGAACTAATTGAACTCGGGAAGCCATTTGGTAAAGTCGTGAACACAAAGTGTAATGTTGGAGCAAACAGGAATCAAGCCTTCATTGAATTTGCTGAACAAAATCAAGCAATTGCAATGATATCATATTATGCATCATCATCAGAACCAGCTCAGGTACGAGGGAA...

Protein

Download Protein FASTA

472 aa · TkA05G410740|TK1151|PROTEIN

MASVSSQPQFRYTQTPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFAEQNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTSADVAGNVLLVTIEGNDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFTDSETATSAKDALDGRSIPRYLIPELGACSLKITYSAHTDLSVKFQSHRSRDYTNPMLPVASSAIDATGQFSLGLDGKKIESESNVLLASIENMQYAVTLDV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G410740
TK1151 IDTkA05G410740
OH-1004 IDLXL04_021611
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G410740
LocationChr05:102182911-102187820 (-)
DescriptionSimilar to At5g53180: Polypyrimidine tract-binding protein homolog 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g53180 Plays a role in pre-mRNA splicing. No verified direct reference in this release
At3g01150 Plays a role in pre-mRNA splicing. No verified direct reference in this release
At1g43190 Plays a role in pre-mRNA splicing. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021611 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006417 regulation of translation Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009845 seed germination Biological Process
GO:0033119 negative regulation of RNA splicing Biological Process
GO:0043484 regulation of RNA splicing Biological Process
GO:0000932 P-body Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005681 spliceosomal complex Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0010494 cytoplasmic stress granule Cellular Component
KEGG gene cross-reference
ath:AT1G43190
ath:AT3G01150
ath:AT5G53180
hsa:58155
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.667
Rank 1 · TkA05G410740 · TK1151
Cytoplasm0.538
Rank 2 · TkA05G410740 · TK1151
Cell membrane0.070
Rank 3 · TkA05G410740 · TK1151
Lysosome / Vacuole0.039
Rank 4 · TkA05G410740 · TK1151
Golgi apparatus0.028
Rank 5 · TkA05G410740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22976RRM_1013-72 aa
PF28976RRM_ACIN118-75 aa
PF28442DUF840019-101 aa
PF16842RRM_occluded20-68 aa
PF00076RRM_122-73 aa
PF11835RRM_8109-176 aa
PF25015RBD_AKAP-17A125-143 aa
PF15023DUF4523126-176 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G410740PF22976RRM_1013720.004417.8
TkA05G410740PF28976RRM_ACIN118750.04714.5
TkA05G410740PF28442DUF8400191010.04114.8
TkA05G410740PF16842RRM_occluded20680.004317.6
TkA05G410740PF00076RRM_122737.4e-2380.9
TkA05G410740PF11835RRM_81091763.7e-1350.2
TkA05G410740PF25015RBD_AKAP-17A1251430.002518.0
TkA05G410740PF15023DUF45231261760.03814.5
TkA05G410740PF00076RRM_11291787.4e-2380.9
TkA05G410740PF16842RRM_occluded1381770.004317.6
TkA05G410740PF25015RBD_AKAP-17A1422070.002518.0
TkA05G410740PF22976RRM_101421670.004417.8
TkA05G410740PF28442DUF84001501990.04114.8
TkA05G410740PF28976RRM_ACIN11531780.04714.5
TkA05G410740PF16842RRM_occluded2252500.004317.6
TkA05G410740PF11835RRM_82423203.7e-1350.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FGL9Arabidopsis thalianasp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 286.200%Swiss-ProtHigh
Q9MAC5Arabidopsis thalianasp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 171.400%Swiss-ProtHigh
Q6ICX4Arabidopsis thalianasp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 332.000%Swiss-ProtMedium

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