Gene Card
Gene overview
cDNA / CDS / Protein Sequences
345 bp · TkA05G400510|TK1151|cDNA
ATCCCAAAACTCATCGTCACCGCTTCTTCTACTTCAAACAAACCCATCTCCGGCCGAAGGCTAATCGCTGCCGTAATAGGCGGTGGGCCAGCTGGATCCTCAGCGGCAGAGGCGTTAGCTTCCGGCGGGGTAGAGACATACCTGTTTGAGCGCAGCCCCACCGGTGCCAAACCATGCGGCGGTGCGATCCCACTCTGTATGCTCGACGATTTTTCCATACCGCCGGAGCTCATCGACCGGAAAGTAACCCACATGAAAAT...
345 bp · TkA05G400510|TK1151|CDS
ATCCCAAAACTCATCGTCACCGCTTCTTCTACTTCAAACAAACCCATCTCCGGCCGAAGGCTAATCGCTGCCGTAATAGGCGGTGGGCCAGCTGGATCCTCAGCGGCAGAGGCGTTAGCTTCCGGCGGGGTAGAGACATACCTGTTTGAGCGCAGCCCCACCGGTGCCAAACCATGCGGCGGTGCGATCCCACTCTGTATGCTCGACGATTTTTCCATACCGCCGGAGCTCATCGACCGGAAAGTAACCCACATGAAAAT...
Protein
Download Protein FASTA114 aa · TkA05G400510|TK1151|PROTEIN
IPKLIVTASSTSNKPISGRRLIAAVIGGGPAGSSAAEALASGGVETYLFERSPTGAKPCGGAIPLCMLDDFSIPPELIDRKVTHMKIISPSNLTVDFVKPQVPRVHFDGPSRSA
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G400510 |
|---|---|
| TK1151 ID | TkA05G400510 |
| OH-1004 ID | LXL04_021496 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 98.000 |
| Protein coverage (%) | TK1151 86.842 / OH-1004 16.981Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G400510 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:99634906-99635250 (+) | ||||||||||||
| Description | Similar to CHLP: Geranylgeranyl diphosphate reductase, chloroplastic | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0010189 vitamin E biosynthetic process Biological Process GO:0015979 photosynthesis Biological Process GO:0015995 chlorophyll biosynthetic process Biological Process GO:0033385 geranylgeranyl diphosphate metabolic process Biological Process GO:0033521 phytyl diphosphate biosynthetic process Biological Process GO:0036070 light-independent bacteriochlorophyll biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0009507 chloroplast Cellular Component GO:0009534 chloroplast thylakoid Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0009941 chloroplast envelope Cellular Component | ||||||||||||
| KEGG gene cross-reference | ag:CAA07683 ath:AT1G74470 dosa:Os02g0744900 nta:107783257 rcp:RCAP_rcc00673 syn:sll1091 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF027373HCDH_N6-16 aaPF027373HCDH_N23-58 aaPF07992Pyr_redox_224-64 aaPF01494FAD_binding_324-53 aaPF01134GIDA24-51 aaPF00070Pyr_redox24-54 aaPF12831FAD_oxidored24-53 aaPF03486HI0933_like24-54 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G400510 | PF02737 | 3HCDH_N | 6 | 16 | 0.058 | 14.0 |
| TkA05G400510 | PF02737 | 3HCDH_N | 23 | 58 | 0.058 | 14.0 |
| TkA05G400510 | PF07992 | Pyr_redox_2 | 24 | 64 | 5.7e-05 | 23.4 |
| TkA05G400510 | PF01494 | FAD_binding_3 | 24 | 53 | 0.00011 | 22.3 |
| TkA05G400510 | PF01134 | GIDA | 24 | 51 | 0.00066 | 19.6 |
| TkA05G400510 | PF00070 | Pyr_redox | 24 | 54 | 0.0044 | 18.2 |
| TkA05G400510 | PF12831 | FAD_oxidored | 24 | 53 | 0.0046 | 17.0 |
| TkA05G400510 | PF03486 | HI0933_like | 24 | 54 | 0.0066 | 16.7 |
| TkA05G400510 | PF01266 | DAO | 24 | 55 | 0.01 | 16.1 |
| TkA05G400510 | PF00890 | FAD_binding_2 | 24 | 54 | 0.042 | 13.8 |
| TkA05G400510 | PF13454 | NAD_binding_9 | 24 | 56 | 0.054 | 14.2 |
| TkA05G400510 | PF01946 | Thi4 | 24 | 61 | 0.091 | 12.7 |
| TkA05G400510 | PF13450 | NAD_binding_8 | 25 | 53 | 0.0003 | 21.7 |
| TkA05G400510 | PF13738 | Pyr_redox_3 | 25 | 52 | 0.067 | 13.1 |
| TkA05G400510 | PF13738 | Pyr_redox_3 | 83 | 106 | 0.067 | 13.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.