TkA05G400410 | RubberDandelionOmics

Gene overview

TkA05G400410

Reference: TK1151 Chr: Chr05 Coordinates: 99609315-99611489 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1679 bp · TkA05G400410|TK1151|cDNA

ATAAGGGTTAATCGGTACATGGATAAAAGATGAAGGTTGTCTCTTGTATCTACCCCCAAAAAAATTAACCTGCTTATCCCCTTCCTCTCTCTCTCTCTCTCTCTCTCACTCTCCATGGAAAGCGTTGTTCATAGCTTCGTATCACCTCCTGACTACAGGCTTCAATCGCAATATTTTCCAGCGATGAGAACTGGGTCGATGTCACCATCACCCATTGCACATAGAAGCATGCCATCGTCTCTTTGCCGCGCAGAGAAACC...

CDS

Download CDS FASTA

375 bp · TkA05G400410|TK1151|CDS

ATGCTTCTAAGAATGTACGTAAGATGGGGAGAAAGACAAAGATACAAAACAAGAGTCGTTGAAAAGTCAATGGGAGAAGAAGCCGGGATTAAATCAGCTACAATTGAGGTTGAAGGTCGGTATGCTTTCGGTTATCTTTCAGGCGAAAAAGGAACTCATCGGATTGTTAGACAGTCTCCTTTTAATGCTAAAGGTCTTCGTCAGACGAGTTTTTCGGGGGTTGAAGTCATGCCTCTTCTTCCGGAAGATTCTTTGAACGT...

Protein

Download Protein FASTA

124 aa · TkA05G400410|TK1151|PROTEIN

MLLRMYVRWGERQRYKTRVVEKSMGEEAGIKSATIEVEGRYAFGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEDSLNVEIPEEDLQIGFSRAGGSGGQNVNKVETAVRITHIPTG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G400410`
TK1151 ID	TkA05G400410
OH-1004 ID	LXL04_021494
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 20.736 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G400410

Location Chr05:99609315-99611489 (-)

Description Similar to PRFB1: Peptide chain release factor PrfB1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36170`	Directs the termination of translation in response to the peptide chain termination codon UGA.	A peptide chain release factor 2 affects the stability of UGA-containing transcripts in Arabidopsis chloroplasts.2002 · DOI: 10.1105/tpc.006809

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021494 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006396 RNA processing Biological Process

GO:0006415 translational termination Biological Process

GO:0009657 plastid organization Biological Process

GO:0075523 viral translational frameshifting Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0016149 translation release factor activity, codon specific Molecular Function

KEGG gene cross-reference

aae:aq_1840

ath:AT5G36170

cyp:PCC8801_3422

syn:sll1865

syw:SYNW2311

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.654

Rank 1 · TkA05G400410 · TK1151

Cytoplasm0.531

Rank 2 · TkA05G400410 · TK1151

Mitochondrion0.042

Rank 3 · TkA05G400410 · TK1151

Plastid0.038

Rank 4 · TkA05G400410 · TK1151

Endoplasmic reticulum0.024

Rank 5 · TkA05G400410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03462PCRF1-74 aa

PF00472RF-185-124 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G400410	`PF03462`	PCRF	1	74	9.2e-25	88.3
TkA05G400410	`PF00472`	RF-1	85	124	5.6e-15	56.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVY0`	Arabidopsis thaliana	sp\|Q9LVY0\|PRFB1_ARATH Peptide chain release factor PrfB1, chloroplastic	84.700%	Swiss-Prot	High

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