TkA05G398570 | RubberDandelionOmics

Gene overview

TkA05G398570

Reference: TK1151 Chr: Chr05 Coordinates: 99075692-99076781 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

693 bp · TkA05G398570|TK1151|cDNA

ATGTTTCAAATACTTTGGGTCACCTTCAATGAACCAAATGTGGTTGCCATTCGTGGTTATAGATCTAGGATTTACCCACCAACTAGATGTTCCGGATCTTTTGGGAATTGTAGTTCTGGAGATTCTGAAAGGGAACCATTTATGACGGCACATAATATGATCCTATCTCATGCTGCAGCAGTAAATATCTATCGCACCAAATATCAGGGGAAACAGAAGGCCAATATTGGGATCGTTATGAATGCAGTATGGTATGAACC...

CDS

Download CDS FASTA

693 bp · TkA05G398570|TK1151|CDS

ATGTTTCAAATACTTTGGGTCACCTTCAATGAACCAAATGTGGTTGCCATTCGTGGTTATAGATCTAGGATTTACCCACCAACTAGATGTTCCGGATCTTTTGGGAATTGTAGTTCTGGAGATTCTGAAAGGGAACCATTTATGACGGCACATAATATGATCCTATCTCATGCTGCAGCAGTAAATATCTATCGCACCAAATATCAGGGGAAACAGAAGGCCAATATTGGGATCGTTATGAATGCAGTATGGTATGAACC...

Protein

Download Protein FASTA

230 aa · TkA05G398570|TK1151|PROTEIN

MFQILWVTFNEPNVVAIRGYRSRIYPPTRCSGSFGNCSSGDSEREPFMTAHNMILSHAAAVNIYRTKYQGKQKANIGIVMNAVWYEPISNSSEDKIAAQRAQSFYMNWFLDPIIYGKYPQEMKDILGSLLPDFSKDYSEKLNNGLDFIGVNHYTSFYVKDCLHSTCEQGPCISKTEGYYLRTPLKNNALIGESTTLDWLYVYPQGMEKMVTYLKNRYNNIPMFITENGES

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G398570`
TK1151 ID	TkA05G398570
OH-1004 ID	LXL04_010078
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.400
Protein coverage (%)	TK1151 96.957 / OH-1004 39.609 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G398570

Location Chr05:99075692-99076781 (-)

Description Similar to BGLU47: Beta-glucosidase 47

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g61810`	Hydrolyzes p-nitrophenyl beta-D-glucoside and natural glucosides such as syringin, coniferin and p-coumaryl alcohol glucoside.	Arabidopsis thaliana beta-Glucosidases BGLU45 and BGLU46 hydrolyse monolignol glucosides.2006 · DOI: 10.1016/j.phytochem.2006.05.022
`At1g61820`	Hydrolyzes p-nitrophenyl beta-D-glucoside, p-nitrophenyl beta-D-galactoside and natural glucosides such as salicin, p-coumaryl alcohol glucoside, phenyl-beta-D-glucoside, coniferin, syringin and arbutin.	Arabidopsis thaliana beta-Glucosidases BGLU45 and BGLU46 hydrolyse monolignol glucosides.2006 · DOI: 10.1016/j.phytochem.2006.05.022
`At4g21760`	Beta-glucosidase 47.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0513900`	Hydrolyzes glycosides and monolignol glucosides.	No verified direct reference in this release
`Os04g0513400`	Hydrolyzes glycosides and monolignol glucosides.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010078 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0016137 glycoside metabolic process Biological Process

GO:0033491 coniferin metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004565 beta-galactosidase activity Molecular Function

GO:0008422 beta-glucosidase activity Molecular Function

GO:0033907 beta-D-fucosidase activity Molecular Function

GO:0047782 coniferin beta-glucosidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G61810

ath:AT1G61820

ath:AT4G21760

dosa:Os04g0513100

dosa:Os04g0513900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.312

Rank 1 · TkA05G398570 · TK1151

Extracellular0.187

Rank 2 · TkA05G398570 · TK1151

Lysosome / Vacuole0.109

Rank 3 · TkA05G398570 · TK1151

Endoplasmic reticulum0.098

Rank 4 · TkA05G398570 · TK1151

Nucleus0.094

Rank 5 · TkA05G398570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00232Glyco_hydro_15-228 aa

PF13828DUF419054-83 aa

PF16317Glyco_hydro_9962-92 aa

PF16317Glyco_hydro_99101-155 aa

PF16317Glyco_hydro_99203-225 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G398570	`PF00232`	Glyco_hydro_1	5	228	7.7e-44	150.7
TkA05G398570	`PF13828`	DUF4190	54	83	0.04	14.4
TkA05G398570	`PF16317`	Glyco_hydro_99	62	92	0.03	14.2
TkA05G398570	`PF16317`	Glyco_hydro_99	101	155	0.03	14.2
TkA05G398570	`PF16317`	Glyco_hydro_99	203	225	0.03	14.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80689`	Arabidopsis thaliana	sp\|O80689\|BGL45_ARATH Beta-glucosidase 45	57.600%	Swiss-Prot	High
`O80690`	Arabidopsis thaliana	sp\|O80690\|BGL46_ARATH Beta-glucosidase 46	55.800%	Swiss-Prot	High
`Q9SVS1`	Arabidopsis thaliana	sp\|Q9SVS1\|BGL47_ARATH Beta-glucosidase 47	55.600%	Swiss-Prot	High
`Q7XSK0`	Oryza sativa subsp. japonica	sp\|Q7XSK0\|BGL18_ORYSJ Beta-glucosidase 18	52.000%	Swiss-Prot	High
`Q7XSK2`	Oryza sativa subsp. japonica	sp\|Q7XSK2\|BGL16_ORYSJ Beta-glucosidase 16	50.400%	Swiss-Prot	High

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