TkA05G384870 | RubberDandelionOmics

Gene overview

TkA05G384870

Reference: TK1151 Chr: Chr05 Coordinates: 95631513-95634009 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2278 bp · TkA05G384870|TK1151|cDNA

GTGAATTCAACAACAACAGTAAAACTGTAAAAGAGGAAAAAGCAGTGCACTTGGAGCACAGTGTGGGGTTTTAGAGAGAGAAAACCCGGAAGAAAAAAACACACAGGTATCACATTTCTTTATGCAATTCTCAATGTTTTCGCAGGATTTTTATTTATAAATTAATCTCCTTGTTTTATTGAGATTTGCGTTATTCAGTCCCTTTTAATTCATGCCCCTTTTCCATCTTTCTCTTTACCCAAGTGGGAGCTAGAAATTAA...

CDS

Download CDS FASTA

1056 bp · TkA05G384870|TK1151|CDS

ATGAATCACGAGAAGAAGTCAAGAAACAGAGCTAAGTTTATGGAGTCCAACAAACTAATGCGGAAGATCCGAGTCATCTGCTACGACCCGGATTTGACTGATTCATCTGATGACGATGAGCCAAACAAAAAACCCTTTGGGTCAAAGCGGATTGTCCGAGAAATAAAGATTCCGGTCGGCGAAGGCGGCGTTTCCGGTGGATGTACGGTTACGATAGCGACTAAAGACCAGGATCCAGAAAGTTCTTGTCAAGATAGTAA...

Protein

Download Protein FASTA

351 aa · TkA05G384870|TK1151|PROTEIN

MNHEKKSRNRAKFMESNKLMRKIRVICYDPDLTDSSDDDEPNKKPFGSKRIVREIKIPVGEGGVSGGCTVTIATKDQDPESSCQDSNNGEKSCGKRKRVLTKTSGQPRQATASKYRGVRQRKWGKWAAEIRDPFKQRRVWLGTYDTAEEASRAYEVKKLEFEAMAMAEASKGGSGSNNVKSTTTSTKAPSSSTAASQPPKPTISEESVGVISHISPSSVLETESSSISRKIISSAGASETCNAESKLQNVTEPPVTIRSP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G384870`
TK1151 ID	TkA05G384870
OH-1004 ID	LXL04_024963
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	47.200
Protein coverage (%)	TK1151 94.302 / OH-1004 77.871 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G384870

Location Chr05:95631513-95634009 (-)

Description Similar to ERF118: Ethylene-responsive transcription factor ERF118

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68550`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At3g25890`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g49120`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g53290`	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development.	No verified direct reference in this release
`At1g28370`	Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024963 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0048364 root development Biological Process

GO:0048366 leaf development Biological Process

GO:0048825 cotyledon development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G68550

ath:AT3G25890

ath:AT4G23750

ath:AT4G27950

ath:AT5G53290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.975

Rank 1 · TkA05G384870 · TK1151

Cytoplasm0.085

Rank 2 · TkA05G384870 · TK1151

Cell membrane0.027

Rank 3 · TkA05G384870 · TK1151

Endoplasmic reticulum0.016

Rank 4 · TkA05G384870 · TK1151

Plastid0.012

Rank 5 · TkA05G384870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP2113-163 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G384870	`PF00847`	AP2	113	163	1.2e-13	51.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9CA27`	Arabidopsis thaliana	sp\|Q9CA27\|EF118_ARATH Ethylene-responsive transcription factor ERF118	34.100%	Swiss-Prot	Medium
`Q9LUA2`	Arabidopsis thaliana	sp\|Q9LUA2\|EF119_ARATH Ethylene-responsive transcription factor ERF119	43.500%	Swiss-Prot	Low
`Q9M9B2`	Arabidopsis thaliana	sp\|Q9M9B2\|EF117_ARATH Ethylene-responsive transcription factor ERF117	39.900%	Swiss-Prot	Low
`Q9FK12`	Arabidopsis thaliana	sp\|Q9FK12\|CRF3_ARATH Ethylene-responsive transcription factor CRF3	37.700%	Swiss-Prot	Low
`Q9C5I3`	Arabidopsis thaliana	sp\|Q9C5I3\|ERF76_ARATH Ethylene-responsive transcription factor 11	68.800%	Swiss-Prot	Low

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