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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G360390
Reference: TK1151 Chr: Chr05 Coordinates: 89464883-89469732 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3170 bp · TkA05G360390|TK1151|cDNA

CAGAAAGAAACATTTTAATTTGGGTTCGATTAGCTGGCAAACGGCTGTGGTCAACTAATCAACTTCTGGAGTTCGAGTTGAGGCACCTGTACATAAATTCGTTACATCTTAAATCGCCAAAACAGCCCTTTGGAAAATAAGGAACAAGAAAAAGAATACACCCTCACTCGATCTTCTGTTCTTCTTTAAATCCGATTTGGATCCGTAATTCTTAATAATACTTTAAATCCGCGATTTTCTTAATTTAGGATCATTAGGAT...

CDS

Download CDS FASTA

2073 bp · TkA05G360390|TK1151|CDS

ATGGCCGATGGTTTATCCGCCATTCCGGCGGCCGTTCTTCGAAACCTGTCCGATAAGTTATACGAGAAGCGGAAAAATGCTGCACTTGAGGTTGAAGGAATTGTAAAGCAATTGACAATTGCGGGAGAGCATGATAAAATTAATGCCATGATTAATCTGTTAACGCATGAGTTCACTTGCTCAAATCAAACAAGTCATCGGAAGGGAGGGTTGATCGGACTAGCTGCAATTACTGTTGGGTTAAGTGCGGAAGCTGCTCA...

Protein

Download Protein FASTA

690 aa · TkA05G360390|TK1151|PROTEIN

MADGLSAIPAAVLRNLSDKLYEKRKNAALEVEGIVKQLTIAGEHDKINAMINLLTHEFTCSNQTSHRKGGLIGLAAITVGLSAEAAQHLEQIVPPVINSFSDQDSRVRYYACEALYNIAKVVRGDFIVFFNKIFDALCKLSADSDPNVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G360390
TK1151 IDTkA05G360390
OH-1004 IDLXL04_025098
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)83.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G360390
LocationChr05:89464883-89469732 (+)
DescriptionSimilar to VAC14: Protein VAC14 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g01690 The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025098 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006661 phosphatidylinositol biosynthetic process Biological Process
GO:0007033 vacuole organization Biological Process
GO:0007165 signal transduction Biological Process
GO:0009555 pollen development Biological Process
GO:1903100 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate metabolic process Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0000325 plant-type vacuole Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0010008 endosome membrane Cellular Component
GO:0031901 early endosome membrane Cellular Component
GO:0031902 late endosome membrane Cellular Component
KEGG gene cross-reference
ath:AT2G01690
dre:447912
gga:415678
hsa:55697
xla:447315
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.609
Rank 1 · TkA05G360390 · TK1151
Golgi apparatus0.254
Rank 2 · TkA05G360390 · TK1151
Nucleus0.217
Rank 3 · TkA05G360390 · TK1151
Lysosome / Vacuole0.164
Rank 4 · TkA05G360390 · TK1151
Cell membrane0.134
Rank 5 · TkA05G360390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25782TPR_CAND16-36 aa
PF23271HEAT_GCN19-122 aa
PF25767ARM_TBCD_2nd10-100 aa
PF02985HEAT12-32 aa
PF24714TOR1L1_N12-240 aa
PF12717Cnd114-55 aa
PF11865mTOR_dom23-123 aa
PF24987HEAT_EF3_N24-122 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G360390PF25782TPR_CAND16363.2e-0628.2
TkA05G360390PF23271HEAT_GCN191223.1e-1764.0
TkA05G360390PF25767ARM_TBCD_2nd101000.1112.6
TkA05G360390PF02985HEAT12324.4e-1864.4
TkA05G360390PF24714TOR1L1_N122406e-1349.5
TkA05G360390PF12717Cnd114551e-1249.1
TkA05G360390PF11865mTOR_dom231239.1e-0523.2
TkA05G360390PF24987HEAT_EF3_N241221.5e-1764.8
TkA05G360390PF22956PIK3R4-like_middle511531.6e-0627.9
TkA05G360390PF25780TPR_IPO5571221.2e-0629.6
TkA05G360390PF10363RTP1_C1611334.3e-0627.5
TkA05G360390PF12755Vac14_Fab1_bd661616.1e-51171.8
TkA05G360390PF13513HEAT_EZ671181.4e-1558.0
TkA05G360390PF23227HEAT_MROH2B_C671233.3e-0627.3
TkA05G360390PF12717Cnd1731541e-1249.1
TkA05G360390PF25757TPR_DNAAF5821512.4e-1144.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZU97Arabidopsis thalianasp|Q9ZU97|VAC14_ARATH Protein VAC14 homolog79.400%Swiss-ProtHigh

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