TkA05G357730 | RubberDandelionOmics

Gene overview

TkA05G357730

Reference: TK1151 Chr: Chr05 Coordinates: 88733750-88736762 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1932 bp · TkA05G357730|TK1151|cDNA

AAATGTGGGTGGTTTTTACCTTTTAGCCCCTCTTTAATCATTTATTACATAACCTTCGTCTCCGTCCCCTTACCCTAATAACCTCCCAATCTCACTTCAGATTGGAATCGCATCAACACACATCAACTAGCCATGGCGATGCGCCACCTCCTCAAGCTCTCCCGCCGCTCTCAAAGAACTTTAGCAGCGTCCACCATCACTAGATCCGCTTCAACCGCAACCGCCGTTTCCAGCGTCTCCGACACGCCCACACCAGCTCC...

CDS

Download CDS FASTA

1587 bp · TkA05G357730|TK1151|CDS

ATGGCGATGCGCCACCTCCTCAAGCTCTCCCGCCGCTCTCAAAGAACTTTAGCAGCGTCCACCATCACTAGATCCGCTTCAACCGCAACCGCCGTTTCCAGCGTCTCCGACACGCCCACACCAGCTCCACCACATCCTCACCAAATGATCTACGATCGCGTTGCGGAAGAAGTCAAATCTAAGCTTAGGCGACTCGAAAACCCCGACCCTAGGTTCCTCAAACACAACTCGCCGTACCCTACCCTAACGGATCACACATC...

Protein

Download Protein FASTA

528 aa · TkA05G357730|TK1151|PROTEIN

MAMRHLLKLSRRSQRTLAASTITRSASTATAVSSVSDTPTPAPPHPHQMIYDRVAEEVKSKLRRLENPDPRFLKHNSPYPTLTDHTSILTYPETRVTTLPNGLRVATESNLASQTATVGVWIDAGSRFETEENNGVAHFLEHMIFKGTSKRSVRDLEEEIENMGGHLNAYTSREQTTYYAKVMGGDVPKALDILSDILQNSTFDERLINRERGVILREMEEVGAQTEEVIFDHLHATAFQYTPLGRTILGPAENIQKITK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G357730`
TK1151 ID	TkA05G357730
OH-1004 ID	LXL04_021147
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G357730

Location Chr05:88733750-88736762 (+)

Description Similar to MPPbeta: Probable mitochondrial-processing peptidase subunit beta, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g02090`	Catalytic subunit of the essential mitochondrial processing protease (MPP), which cleaves the mitochondrial sequence off newly imported precursors proteins (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021147 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006627 protein processing involved in protein targeting to mitochondrion Biological Process

GO:0006851 mitochondrial calcium ion transmembrane transport Biological Process

GO:0016485 protein processing Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005741 mitochondrial outer membrane Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005758 mitochondrial intermembrane space Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

KEGG gene cross-reference

ath:AT3G02090

bta:534546

hsa:9512

mmu:73078

rno:64198

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.946

Rank 1 · TkA05G357730 · TK1151

Cytoplasm0.047

Rank 2 · TkA05G357730 · TK1151

Nucleus0.041

Rank 3 · TkA05G357730 · TK1151

Cell membrane0.017

Rank 4 · TkA05G357730 · TK1151

Plastid0.011

Rank 5 · TkA05G357730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00675Peptidase_M16104-251 aa

PF05193Peptidase_M16_C129-198 aa

PF08367M16C_assoc146-210 aa

PF05193Peptidase_M16_C257-443 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G357730	`PF00675`	Peptidase_M16	104	251	6.7e-56	189.0
TkA05G357730	`PF05193`	Peptidase_M16_C	129	198	1.2e-41	143.3
TkA05G357730	`PF08367`	M16C_assoc	146	210	0.14	12.1
TkA05G357730	`PF05193`	Peptidase_M16_C	257	443	1.2e-41	143.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q42290`	Arabidopsis thaliana	sp\|Q42290\|MPPB_ARATH Probable mitochondrial-processing peptidase subunit beta, mitochondrial	70.400%	Swiss-Prot	High

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