Gene Card
Gene overview
cDNA / CDS / Protein Sequences
806 bp · TkA05G349260|TK1151|cDNA
CACCATCTTACACTACTTGTTCTCTACCAACTAACGTTTTTCAGTTTTTAACAAGTCAATCACAACAATCCAGAAAATGACAAAAAACGCACGATTGGAAGAAGGCAATGCCTCTAAAGTCCTGGTGCCTGTTGGTTCAAACAAAGGGGTTTCGGTGATGGATCTTGTTTTGCGCTTGATTGGCATCGCGGGTACTTTAGGTGCCGCAATAGCCATGGGAACCAATGAAGAAACCTTGCCTTTCTTCACTCGGTTTGTGC...
576 bp · TkA05G349260|TK1151|CDS
ATGACAAAAAACGCACGATTGGAAGAAGGCAATGCCTCTAAAGTCCTGGTGCCTGTTGGTTCAAACAAAGGGGTTTCGGTGATGGATCTTGTTTTGCGCTTGATTGGCATCGCGGGTACTTTAGGTGCCGCAATAGCCATGGGAACCAATGAAGAAACCTTGCCTTTCTTCACTCGGTTTGTGCAATTCAGCGCCGAATATGATGATTTTACATCCTTTAGATTGTTTGTTGATGTAAACGCCATAGTTTGTGCATATTT...
Protein
Download Protein FASTA191 aa · TkA05G349260|TK1151|PROTEIN
MTKNARLEEGNASKVLVPVGSNKGVSVMDLVLRLIGIAGTLGAAIAMGTNEETLPFFTRFVQFSAEYDDFTSFRLFVDVNAIVCAYFFLTVPLSIVHIMRSKARGSRILLIILDTVMLALLTAAASGAASIIYLAHNGNTSTNWLPVCQQYGDFCMAASGSLIGSFGAVVVFILLILLGAIAISRQMKRVL
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G349260 |
|---|---|
| TK1151 ID | TkA05G349260 |
| OH-1004 ID | LXL04_025148 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 74.600 |
| Protein coverage (%) | TK1151 98.429 / OH-1004 96.923Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G349260 |
|---|---|
| Location | Chr05:86500565-86501660 (+) |
| Description | Similar to Casparian strip membrane protein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0007043 cell-cell junction assembly Biological Process GO:0042545 cell wall modification Biological Process GO:0071555 cell wall organization Biological Process GO:0005886 plasma membrane Cellular Component |
| KEGG gene cross-reference | gmx:100500346 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04535CASP_dom23-171 aaPF19779DUF626431-102 aaPF19779DUF6264119-186 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G349260 | PF04535 | CASP_dom | 23 | 171 | 7e-46 | 156.4 |
| TkA05G349260 | PF19779 | DUF6264 | 31 | 102 | 1.4 | 9.8 |
| TkA05G349260 | PF19779 | DUF6264 | 119 | 186 | 1.4 | 9.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.