TkA05G335510 | RubberDandelionOmics

Gene overview

TkA05G335510

Reference: TK1151 Chr: Chr05 Coordinates: 82901274-82903129 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1381 bp · TkA05G335510|TK1151|cDNA

CTAATTGGTTTCATGTTGATACTAAAATCACTATTGACTACCACATTTTATATAAAATATAAGCATTCAACTTACTTAAACCTCCAAGATCTTTGACATAATTGAAGATGAAGATTCAGATGAAAAGTACATTGCCATTTCTGGGAATGGTGATTGGTCAGATTGCGCAGGTTGGTTTGACTTTAGCCGGGAAGAAAGCTATAACAAGCGGGATGCATAACTTTTCTTATGTTTTCTACTCCAACTTTTTAGCTTCCCTT...

CDS

Download CDS FASTA

1065 bp · TkA05G335510|TK1151|CDS

ATGAAGATTCAGATGAAAAGTACATTGCCATTTCTGGGAATGGTGATTGGTCAGATTGCGCAGGTTGGTTTGACTTTAGCCGGGAAGAAAGCTATAACAAGCGGGATGCATAACTTTTCTTATGTTTTCTACTCCAACTTTTTAGCTTCCCTTATTCTACTTCCTACTTCTTTTCTCGTTCATAGATCACCAAATCGCCCACCTCTAACTTTATCGGTCGCCGGTGGTTTTCTTGTGGTTGGCATACTAGGGTTCTTGGT...

Protein

Download Protein FASTA

354 aa · TkA05G335510|TK1151|PROTEIN

MKIQMKSTLPFLGMVIGQIAQVGLTLAGKKAITSGMHNFSYVFYSNFLASLILLPTSFLVHRSPNRPPLTLSVAGGFLVVGILGFLVQVVGYAGLTYASATVATAILNLIPGFTFILAIIFGVERLDYGGLSMWAKIIGTLVSVLGAIIVTFYTGPTIITSRLTSIAPHHLLGESSSDWILGGVLMLIDCVLAALFIIAQAVVLKKYSAVLILMLAYCSIIAVLSLLASLIWEHDLGAFSLQSKTRLLAILYAGCFGAGF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G335510`
TK1151 ID	TkA05G335510
OH-1004 ID	LXL04_020936
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G335510

Location Chr05:82901274-82903129 (-)

Description Similar to At3g28050: WAT1-related protein At3g28050

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g28050`	WAT1-related protein At3g28050.	No verified direct reference in this release
`At5g40230`	WAT1-related protein At5g40230.	No verified direct reference in this release
`At5g40210`	WAT1-related protein At5g40210.	No verified direct reference in this release
`At3g28100`	WAT1-related protein At3g28100.	No verified direct reference in this release
`At3g28070`	WAT1-related protein At3g28070.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020936 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:1900150 regulation of defense response to fungus Biological Process

GO:1900425 negative regulation of defense response to bacterium Biological Process

GO:1902289 negative regulation of defense response to oomycetes Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G70260

ath:AT3G28050

ath:AT5G40210

ath:AT5G40230

ath:AT5G40240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.430

Rank 1 · TkA05G335510 · TK1151

Lysosome / Vacuole0.235

Rank 2 · TkA05G335510 · TK1151

Endoplasmic reticulum0.202

Rank 3 · TkA05G335510 · TK1151

Golgi apparatus0.073

Rank 4 · TkA05G335510 · TK1151

Cytoplasm0.064

Rank 5 · TkA05G335510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00892EamA19-151 aa

PF14972Mito_morph_reg166-236 aa

PF00892EamA182-319 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G335510	`PF00892`	EamA	19	151	4.7e-14	53.5
TkA05G335510	`PF14972`	Mito_morph_reg	166	236	0.27	11.6
TkA05G335510	`PF00892`	EamA	182	319	4.7e-14	53.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94JU2`	Arabidopsis thaliana	sp\|Q94JU2\|WTR18_ARATH WAT1-related protein At3g28050	40.700%	Swiss-Prot	Medium
`F4KHA8`	Arabidopsis thaliana	sp\|F4KHA8\|WTR41_ARATH WAT1-related protein At5g40230	36.000%	Swiss-Prot	Medium
`Q945L4`	Arabidopsis thaliana	sp\|Q945L4\|WTR40_ARATH WAT1-related protein At5g40210	36.700%	Swiss-Prot	Medium
`Q9LRS5`	Arabidopsis thaliana	sp\|Q9LRS5\|WTR22_ARATH WAT1-related protein At3g28100	35.800%	Swiss-Prot	Medium
`Q8VYZ7`	Arabidopsis thaliana	sp\|Q8VYZ7\|WTR20_ARATH WAT1-related protein At3g28070	36.300%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card