TkA05G333930 | RubberDandelionOmics

Gene overview

TkA05G333930

Reference: TK1151 Chr: Chr05 Coordinates: 82260529-82262857 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

753 bp · TkA05G333930|TK1151|cDNA

GGATTAGAGCCTCCGAGGCTCCAATCATTCGATGCACAAATCAGTTCTGATTCCTCTTGTAGTCTCAAGCATCTCCCGATTCCGATTTCAATCGATCTTCGACTTTGCGATCCGAGCGATCTCTGCAACTCCATAAAAACCATATTTCGTCAAGTGGCTTATCGCCTCCTCACCCGATCTACCAACACTTACACCGCCGGCGCCGCTGCTACCCTTCGCCGGCCCTGCGCGACAGAGGTCTCTGCTGATACCGCACCCGG...

CDS

Download CDS FASTA

753 bp · TkA05G333930|TK1151|CDS

GGATTAGAGCCTCCGAGGCTCCAATCATTCGATGCACAAATCAGTTCTGATTCCTCTTGTAGTCTCAAGCATCTCCCGATTCCGATTTCAATCGATCTTCGACTTTGCGATCCGAGCGATCTCTGCAACTCCATAAAAACCATATTTCGTCAAGTGGCTTATCGCCTCCTCACCCGATCTACCAACACTTACACCGCCGGCGCCGCTGCTACCCTTCGCCGGCCCTGCGCGACAGAGGTCTCTGCTGATACCGCACCCGG...

Protein

Download Protein FASTA

250 aa · TkA05G333930|TK1151|PROTEIN

GLEPPRLQSFDAQISSDSSCSLKHLPIPISIDLRLCDPSDLCNSIKTIFRQVAYRLLTRSTNTYTAGAAATLRRPCATEVSADTAPGDSAFSEAWKKVAPTIDPPKILIQFMEPRPPTPSSLPAKLTVNFVLPYSSELSKKEVDMVIVPATTGQMGILPGHVPMSFVSLFRFRLISNLLITDLFRAAAVSRAFIPGVATTSKSVTYSEISVALDLRQQDLRQHLLHFVVVSLVVYTHGVTPLVPMYDFAR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G333930`
TK1151 ID	TkA05G333930
OH-1004 ID	LXL04_024822
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.500
Protein coverage (%)	TK1151 92.400 / OH-1004 27.402 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G333930

Location Chr05:82260529-82262857 (-)

Description Similar to ATP synthase subunit delta', mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47030`	Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024822 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015986 proton motive force-driven ATP synthesis Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0045259 proton-transporting ATP synthase complex Cellular Component

GO:0008270 zinc ion binding Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0046933 proton-transporting ATP synthase activity, rotational mechanism Molecular Function

KEGG gene cross-reference

ath:AT5G47030

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.771

Rank 1 · TkA05G333930 · TK1151

Plastid0.127

Rank 2 · TkA05G333930 · TK1151

Cytoplasm0.100

Rank 3 · TkA05G333930 · TK1151

Nucleus0.085

Rank 4 · TkA05G333930 · TK1151

Cell membrane0.015

Rank 5 · TkA05G333930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02823ATP-synt_DE_N125-164 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G333930	`PF02823`	ATP-synt_DE_N	125	164	1.8e-08	34.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q96252`	Arabidopsis thaliana	sp\|Q96252\|ATP4_ARATH ATP synthase subunit delta', mitochondrial	75.000%	Swiss-Prot	Low

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