TkA05G323370 | RubberDandelionOmics

Gene overview

TkA05G323370

Reference: TK1151 Chr: Chr05 Coordinates: 79710886-79715627 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2109 bp · TkA05G323370|TK1151|cDNA

GGGAATGCGTACGCCATTATCATGCGATCCTCTGAAAATGCAAGCAGCACTAAGTTACCTGCAACTTTTATAGCTGGTTCGAGAAGGTTATACCTCTGAAAGCGGATTCCATCACTTATTTCATTCCGATTACATCTTTGGAAAGCAGCAGAAATCAAGTTCTTAATACTAGCTTACATTATTATCATCAGCTGCGGCCTACAGAGTTGGGCATCTTGGATCTTGTGCACAGATGGATGACAGTTGTTCTGAAGGAGGCG...

CDS

Download CDS FASTA

1713 bp · TkA05G323370|TK1151|CDS

ATGGATGACAGTTGTTCTGAAGGAGGCGACAACATTGATTGGAATACTGATGATGAGCTGGAGATAGCTAATATATCATCATCATCTTCCTCGGTTTCTTTGACTAATAATGGAGCTGCTGCTATATCCGTATTCGAATTCGGGGAGTCAAGTTCTTCTACCAATGAGTCTTCTAAGTTACTTCACTTTACAAAAATGGGATTTCCTCAAGTAATGGTGGCCAAAGTCATAGCAGAACTTGGAGATGATGATACTGATGC...

Protein

Download Protein FASTA

570 aa · TkA05G323370|TK1151|PROTEIN

MDDSCSEGGDNIDWNTDDELEIANISSSSSSVSLTNNGAAAISVFEFGESSSSTNESSKLLHFTKMGFPQVMVAKVIAELGDDDTDAILDMLLTYSALDEIPHQEQELNDPIEKPESNFSSDFSDFDDSCSDEDSNELLEKDDPLVCLIDMGYSLEEASTAITRCGKDVALEDLVDFLSAAHISKEADAQFENRNSKKDNFWIKRKQLLLAKNPKRKRNDNLTLHLPNPMIGFGLPRHPSHVAHRPLPDAVIGPPYFYYE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G323370`
TK1151 ID	TkA05G323370
OH-1004 ID	LXL04_020877
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.700
Protein coverage (%)	TK1151 100.000 / OH-1004 99.097 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G323370

Location Chr05:79710886-79715627 (+)

Description Similar to DRM2: DNA (cytosine-5)-methyltransferase DRM2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q9M548`	Involved in de novo DNA methylation.	No verified direct reference in this release
`UniProt: Q9LXE5`	Involved in de novo DNA methylation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0110800`	Involved in de novo DNA methylation.	No verified direct reference in this release
`Os11g0109200`	Involved in de novo DNA methylation.	No verified direct reference in this release
`Os12g0108900`	Involved in de novo DNA methylation.	No verified direct reference in this release
`Os05g0133900`	Involved in de novo DNA methylation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020877 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process

GO:0032259 methylation Biological Process

GO:0040029 epigenetic regulation of gene expression Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003886 DNA (cytosine-5-)-methyltransferase activity Molecular Function

GO:0008168 methyltransferase activity Molecular Function

GO:0009008 DNA-methyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT5G14620

ath:AT5G15380

dosa:Os03g0110800

dosa:Os05g0133900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.880

Rank 1 · TkA05G323370 · TK1151

Cytoplasm0.161

Rank 2 · TkA05G323370 · TK1151

Cell membrane0.031

Rank 3 · TkA05G323370 · TK1151

Mitochondrion0.022

Rank 4 · TkA05G323370 · TK1151

Plastid0.018

Rank 5 · TkA05G323370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23053UBA_N4BP160-91 aa

PF00145DNA_methylase374-433 aa

PF00145DNA_methylase447-561 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G323370	`PF23053`	UBA_N4BP1	60	91	0.0002	21.7
TkA05G323370	`PF00145`	DNA_methylase	374	433	2e-13	51.2
TkA05G323370	`PF00145`	DNA_methylase	447	561	2e-13	51.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M548`	Arabidopsis thaliana	sp\|Q9M548\|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2	53.700%	Swiss-Prot	High
`Q9LXE5`	Arabidopsis thaliana	sp\|Q9LXE5\|DRM1L_ARATH DNA (cytosine-5)-methyltransferase DRM1	51.500%	Swiss-Prot	High
`Q10SU5`	Oryza sativa subsp. japonica	sp\|Q10SU5\|DRM2_ORYSJ DNA (cytosine-5)-methyltransferase DRM2	49.700%	Swiss-Prot	Medium
`Q2RBJ4`	Oryza sativa subsp. japonica	sp\|Q2RBJ4\|DRM1A_ORYSJ DNA (cytosine-5)-methyltransferase DRM1A	39.700%	Swiss-Prot	Medium
`Q2QYR5`	Oryza sativa subsp. japonica	sp\|Q2QYR5\|DRM1B_ORYSJ Probable inactive DNA (cytosine-5)-methyltransferase DRM1B	42.800%	Swiss-Prot	Medium
`Q6AUQ7`	Oryza sativa subsp. japonica	sp\|Q6AUQ7\|DRM3_ORYSJ Probable inactive DNA (cytosine-5)-methyltransferase DRM3	43.500%	Swiss-Prot	Medium

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