TkA05G308580 | RubberDandelionOmics

Gene overview

TkA05G308580

Reference: TK1151 Chr: Chr05 Coordinates: 76147186-76149219 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1640 bp · TkA05G308580|TK1151|cDNA

AAACATTTGGGTCTACTTTGACAAAAAATAGTTACTTTGGGTCTAAACCAAAAAACAATCAAAATACAGGATCTTGGAAAAACACTTAAACGTAAATAATTAGAAAGAGCAGATGAGATTTGTTCTTACTCGATCAATTCGAGAACCCATCATCTTCTAGACGAGTTGAAGCTGAAGCTGTCTTCAGTCTAGCGATTAATGTTCCCGTCGATGTACCATCCTGGCGTTTGTTAAAAGTCCCAAGTGAAAGTTTTACTTAT...

CDS

Download CDS FASTA

1158 bp · TkA05G308580|TK1151|CDS

ATGGACTGGAGACGACGAATGTCCAATCTGAGCAGAGGAGGGAGTTTGATCGTAGCAATTGGATCTCTATTAGTTGCTACGTTCTCTATTATAATGGTGGTTAGAGGAGGGACAATCTTAAATCATTATGTCGATCAATCTAGTTCTTGTGAGTTTCCAGCAATCTACAACTTTGGTGATTCGAATTCTGATACAGGAGCTGTATCCGCTGTATTTGGCCGCGTTCTTCCTCCTTATGGGATGACCTATTTTCATAAACC...

Protein

Download Protein FASTA

385 aa · TkA05G308580|TK1151|PROTEIN

MDWRRRMSNLSRGGSLIVAIGSLLVATFSIIMVVRGGTILNHYVDQSSSCEFPAIYNFGDSNSDTGAVSAVFGRVLPPYGMTYFHKPSGRYSDGRLIIDFLAEKLGLPYLSAYLDSIGTNFRHGANFAASGCTIQPSDALMLNRTFNPLTLDVQIKQFEQFKQRSSDLYREGFDIKDGFPRPEDYTRSLYTFDIGQNDLHAGIISMEEEQVKTYIPTIINEFASAVEKLYQQGARTFWIHNTGPIGCLPFFVKNYPPTPE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G308580`
TK1151 ID	TkA05G308580
OH-1004 ID	LXL04_013262
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	45.300
Protein coverage (%)	TK1151 92.468 / OH-1004 96.915 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G308580

Location Chr05:76147186-76149219 (+)

Description Similar to At5g14450: GDSL esterase/lipase At5g14450

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g14450`	GDSL esterase/lipase At5g14450.	No verified direct reference in this release
`At3g26430`	Lipase that can hydrolyze p-nitrophenyl butyrate and p- nitrophenyl palmitate in vitro.	The Arabidopsis thaliana ortholog of a purported maize cholinesterase gene encodes a GDSL-lipase.2013 · DOI: 10.1007/s11103-013-0021-8
`At3g27950`	GDSL esterase/lipase At3g27950.	No verified direct reference in this release
`At1g67830`	Hydrolyzes alpha-1,2-linked fucose.	AtFXG1, an Arabidopsis gene encoding alpha-L-fucosidase active against fucosylated xyloglucan oligosaccharides.2002 · DOI: 10.1104/pp.128.1.247

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013262 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006581 acetylcholine catabolic process Biological Process

GO:0009877 nodulation Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0043659 symbiosome Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

GO:0016798 hydrolase activity, acting on glycosyl bonds Molecular Function

GO:0052689 carboxylic ester hydrolase activity Molecular Function

KEGG gene cross-reference

ath:AT3G26430

ath:AT5G14450

mtr:25482476

zma:606473

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.373

Rank 1 · TkA05G308580 · TK1151

Lysosome / Vacuole0.155

Rank 2 · TkA05G308580 · TK1151

Cell membrane0.141

Rank 3 · TkA05G308580 · TK1151

Endoplasmic reticulum0.134

Rank 4 · TkA05G308580 · TK1151

Cytoplasm0.105

Rank 5 · TkA05G308580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL55-362 aa

PF13472Lipase_GDSL_2173-295 aa

PF18290Nudix_hydro195-240 aa

PF18290Nudix_hydro272-319 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G308580	`PF00657`	Lipase_GDSL	55	362	2.1e-48	166.0
TkA05G308580	`PF13472`	Lipase_GDSL_2	173	295	0.074	14.3
TkA05G308580	`PF18290`	Nudix_hydro	195	240	0.03	15.0
TkA05G308580	`PF18290`	Nudix_hydro	272	319	0.03	15.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LY84`	Arabidopsis thaliana	sp\|Q9LY84\|GDL76_ARATH GDSL esterase/lipase At5g14450	49.000%	Swiss-Prot	Medium
`Q9LIN2`	Arabidopsis thaliana	sp\|Q9LIN2\|GDL53_ARATH GDSL esterase/lipase At3g26430	46.200%	Swiss-Prot	Medium
`Q9LII9`	Arabidopsis thaliana	sp\|Q9LII9\|GDL54_ARATH GDSL esterase/lipase At3g27950	47.300%	Swiss-Prot	Medium
`Q9FXE5`	Arabidopsis thaliana	sp\|Q9FXE5\|FUCO3_ARATH Alpha-L-fucosidase 3	45.300%	Swiss-Prot	Medium

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